Gene RSc2016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc2016 
Symbol 
ID1220856 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp2194834 
End bp2195910 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content69% 
IMG OID637238410 
Producthypothetical protein 
Protein accessionNP_520137 
Protein GI17546735 
COG category[R] General function prediction only 
COG ID[COG3173] Predicted aminoglycoside phosphotransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.120817 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.141117 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCAGC AGGATTTCTC GGCCTTCGAG GGCACCCGCC CGGTGGCGGA ACAGCAGCGG 
TTCGACATCG GCGCGCTGGA GGCCTGGATG CGCGGCCACG TGGAGGGCTT CGCCGGGCCG
CTGTCGGTCG AGCAGTTCAA GGGCGGCCAG TCCAACCCCA CCTTCAAGCT CATCACGCCG
TCGCGCACCT ACGTGATGCG CGCCAAGCCG GGGCCCAAGG CCAAGCTGCT GCCATCGGCG
CACGCCATCG AGCGCGAATA CCGCGTGATG GACGCCCTGG CCCGAACCGA TGTGCCGGTC
GCGAAGATGT TCGCGCTGTG CGAGGACGAG TCCGTCATCG GCCGCGCCTT CTACATCATG
GAATTCGTGC AGGGCCGCGT GCTGTGGGAC CAGGCCCTGC CCGGCATGAC GCGCGACGAG
CGCGGCGCCA TCTACGACGA GATGAACCGC GTGATCGCCG CGCTGCACAG CGTGGACCAC
GCCGCCATCG GCCTGGCCGA TTTCGGCAAG CCGGGCAACT ACTTCGCGCG CCAGATCGAG
CGCTGGAGCC GGCAGTACAA GCTGTCGGAG ACCGAGTCGA TCCCGGCCAT GGACAGCCTG
ATCGACTGGC TGCCCGAGCA CGTGCCGCAC GAGGCCGACG AAGTGACCCG CATCGTGCAC
GGCGACTACC GGCTCGACAA CCTGATCTTC CACCCGAGCG AGCCGCGCGT GCTGGCCATC
CTCGACTGGG AGCTGTCGAC GCTGGGCCAT CCGCTGGCCG ACTTCAGCTA CCACTGCATG
AGCTGGCACA TCGCGCCGGG GCAGTTCCGC GGCATCGCGG GGCTGGACCA TGCGGCGCTC
GGCATTCCCA CCGAGGCCGA GTACATCCGC CGCTACGAAG CGCGCACCGG CCGCCGCATC
ACCGGCGACT GGAACTTCTA CCTCGCCTAC AACATGTTCC GCATCGCCGG CATCCTGCAG
GGGATCATGA AGCGCGTGGT GGACGGCACC GCGTCGTCCG CGCAGGCGCT GGAGGCCGGC
AAGCGCGCCC GTCCGATGGC CGAGCTGGGC TGGCAGTACG CCCGGCAGGC CGGCTGA
 
Protein sequence
MTQQDFSAFE GTRPVAEQQR FDIGALEAWM RGHVEGFAGP LSVEQFKGGQ SNPTFKLITP 
SRTYVMRAKP GPKAKLLPSA HAIEREYRVM DALARTDVPV AKMFALCEDE SVIGRAFYIM
EFVQGRVLWD QALPGMTRDE RGAIYDEMNR VIAALHSVDH AAIGLADFGK PGNYFARQIE
RWSRQYKLSE TESIPAMDSL IDWLPEHVPH EADEVTRIVH GDYRLDNLIF HPSEPRVLAI
LDWELSTLGH PLADFSYHCM SWHIAPGQFR GIAGLDHAAL GIPTEAEYIR RYEARTGRRI
TGDWNFYLAY NMFRIAGILQ GIMKRVVDGT ASSAQALEAG KRARPMAELG WQYARQAG