Gene RSc1995 details

Gene Information

• Locus tag: RSc1995
• Symbol: sdhD
• ID: 1220835
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: -
• Start bp: 2172591
• End bp: 2172956
• Gene Length: 366 bp
• Protein Length: 121 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637238389
• Product: putative transmembrane succinate dehydrogenase (hydrophobic membrane anchor subunit) oxidoreductase protein
• Protein accession: NP_520116
• Protein GI: 17546714
• COG category: [C] Energy production and conversion
• COG ID: [COG2142] Succinate dehydrogenase, hydrophobic anchor subunit
• TIGRFAM ID: [TIGR02968] succinate dehydrogenase, hydrophobic membrane anchor protein

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.203757
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 0.570395
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCACAAA ACAATATCGG TCCCAAGCGC CTCGTCGTCG GCGCACACTA CGGCCTGAAG 
GACTTCCTCG CGCAGCGCGT CACCGCCGTG ATCATGGCGG TCTACACCAT CGTGCTGCTG 
GCCGCGTTCC TGTTTTCGAA AGACACGTCG TACCAAAGCT GGGCAGGCCT GTTCGCCAAC 
CAGTGGATGA AGCTGCTGAC GTTCCTCGCT TTCCTGTCGC TCACATATCA CGCATGGATC 
GGCGTGCGTG ACATCTGGAT GGACTACGTG AAGCCCGTGG CAGTGCGTTT GACGCTGCAA 
GTGTTGACGA TTCTGTGGCT CGTCGGTTGC GCGGGCTACG CAGCTCAGAT TCTCTGGAGG 
GTTTAA 

 

Protein sequence

MAQNNIGPKR LVVGAHYGLK DFLAQRVTAV IMAVYTIVLL AAFLFSKDTS YQSWAGLFAN 
QWMKLLTFLA FLSLTYHAWI GVRDIWMDYV KPVAVRLTLQ VLTILWLVGC AGYAAQILWR 
V