Gene RSc1987 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1987 
Symbolasd 
ID1220827 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand- 
Start bp2163510 
End bp2164613 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content64% 
IMG OID637238381 
Productaspartate-semialdehyde dehydrogenase 
Protein accessionNP_520108 
Protein GI17546706 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0136] Aspartate-semialdehyde dehydrogenase 
TIGRFAM ID[TIGR01745] aspartate-semialdehyde dehydrogenase, gamma-proteobacterial 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.385129 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0809556 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGTAG GTCTCGTCGG TTGGCGCGGC ATGGTCGGCA GCGTGCTGAT GCAGCGCATG 
CAGGAAGAAA AGGATTTCGA CCTGATCGAT ACGGTGTTCT TCAGCACCAG CAATGCCGGC 
GGCAAAGCGC CGTCGTTCGC CAAGACGGAC GCCCCGCTGG CGGACGCCAA CGATATCGAC 
GCGCTCAAGC AGTGCGACAC CATCATCACC TGCCAGGGCG GTGACTACAC CACCGAGATC 
TTCCCGAAGC TGCGCGCCGC CGGCTGGAAC GGCTATTGGA TCGACGCCGC TTCGACGCTG 
CGCATGGAAG ACGACGCGGT GATCGTGCTG GACCCGGTCA ACCTGCAGCT GATCAAGGAC 
GCCGTTGCCC GCGGGACCAA GAATTTCATC GGCGGTAACT GCACCAACTC CATCCTGCTG 
ATGGGCGTGG GCGGCCTGTT CCGCGACGGG CTGGTCGAGT GGGTCAGCTC GATGACCTAC 
CAGGCTGCAT CGGGCGGTGG TGCCAACCAC ATGCGCGAAC TGCTCAAGGG CATGGGGGTG 
ATCCACCGCG AAGTGGAGGA AGAGCTGGCC AGCCCGGCCT CGGCCATCCT GGAGATCGAC 
CGCAAGGTTG CCAAGACCAT CCGCGAGGAC GTGCCGACCG AGTACTTCCC GGCACCGCTG 
GCCGGTGGCC TGATCCCCTG GATCGACAAG CAGCTCGACA ACGGCCAGTC CAAGGAAGAA 
TGGAAGGGCC AGGCTGAGGT CAACAAGATC CTGGGCACCG CCCGGACGAT TCCCGTGGAC 
GGCCTGTGCG TGCGGATCGG CGCGATGCGC TGCCACAGCC TGGGCCTGAC GCTCAAGCTC 
AAGCGCGACC TGCCGCTCGA AGAGATCGAG TCCATCATCC GTTCGGGCAA CCCGTGGGTG 
AAGTGGGTGC CGAACGAGCG CGGCATCACC GAACAGGAGC TGACGCCCGC GGCCATCACC 
GGCGGGCTGG ATATCGGCGT GGGCCGCGTG CGTAAGCTGA ATATGGGTCC GGAATATGTC 
AGCGCGTTCG TGATCGGCGA CCAGTTGCTC TGGGGTGCTG CCGAACCGCT GCGTCGGATG 
CTGCGCATTC TGCTGGGCAA GTGA
 
Protein sequence
MKVGLVGWRG MVGSVLMQRM QEEKDFDLID TVFFSTSNAG GKAPSFAKTD APLADANDID 
ALKQCDTIIT CQGGDYTTEI FPKLRAAGWN GYWIDAASTL RMEDDAVIVL DPVNLQLIKD 
AVARGTKNFI GGNCTNSILL MGVGGLFRDG LVEWVSSMTY QAASGGGANH MRELLKGMGV 
IHREVEEELA SPASAILEID RKVAKTIRED VPTEYFPAPL AGGLIPWIDK QLDNGQSKEE 
WKGQAEVNKI LGTARTIPVD GLCVRIGAMR CHSLGLTLKL KRDLPLEEIE SIIRSGNPWV 
KWVPNERGIT EQELTPAAIT GGLDIGVGRV RKLNMGPEYV SAFVIGDQLL WGAAEPLRRM 
LRILLGK