| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1955 |
|---|
| Symbol | fumA |
|---|
| ID | 1220795 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 2133256 |
|---|
| End bp | 2134779 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637238349 |
|---|
| Product | fumarate hydratase protein |
|---|
| Protein accession | NP_520076 |
|---|
| Protein GI | 17546674 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
|---|
| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases
[TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.728356 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.488035 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTCA TTCGTCAAGA AGACCTCATC CAGAGCGTCG CCGACTCCCT GCAGTACATC
AGCTATTACC ACCCGATGGA CTACATCACT GCTCTGGGCC AGGCCTATGA GCAGGAGCAG
AGCCCGGCCG CCAAGGATGC CATCGCGCAG ATCCTGACCA ACAGCCGCAT GTGCGCCGAA
GGCAAGCGCC CGATCTGCCA GGACACCGGC ATCGTCACCG TGTTCCTGAA AGTCGGCATG
AACGTGCGCT GGGACGGCGC CACGATGAGC CTGGAAGACA TGGTCAACGA AGGCGTGCGC
CGCGCCTATA ACGACCAGGA CAACAAGCTG CGCGCCAGCG TCCTGGCCGA CCCGGCCGGC
AAGCGCACCA ACACGAAGGA CAACACCCCG GCGGTGATCA ACATGTCCAT CGTGCCGGGC
GACACAGTGG ACGTGATCGT CGCGGCCAAG GGCGGCGGCT CCGAGGCCAA GTCCAAGTTC
GTGATGCTCA ACCCGTCCGA CTCGATCGTC GACTGGGTGC TCAAGACGGT GCCGACCATG
GGCGCCGGCT GGTGCCCGCC GGGCATGCTG GGCATCGGCA TCGGCGGCAC CGCCGAGAAG
GCGATGCTGC TGGCCAAGGA AGCCCTGATG GAGCCGATCG ACATCCAGGA CCTGATCGCG
CGCGGCCCGT CGAACCGCGC CGAAGAGCTG CGCATCGAGC TCTACGAAAA GGTCAACGCA
CTGGGTATCG GGGCCCAGGG CCTGGGCGGC CTCGCCACCG TGCTCGACGT GAAGATCAAG
GACTACCCGA CCCACGCCGC CAACCTGCCG GTGGCCATGA TCCCGAACTG CGCGGCCACC
CGCCACGCGC ACTTCACGCT GGACGGCAGC GGCGTCGCCA AGCTCGAAGC GCCGGACCTG
TCGCAATGGC CGAAGGTCGA GTGGGCGCCG AACACCGAAA CCTCCAAGCG CGTTGATCTG
AACGCGCTCA CGCCGGAAGA AGTCGCCTCG TGGAAGCCGG GCCAAACCCT GCTGCTCAAC
GGCAAGATGC TCACGGGCCG CGACGCCGCG CACAAGCGCA TCGCCGACAT GCTGGCCCGC
GGCGAACAGT TGCCGATCGA CTTCACCAAC CGCGTGATCT ACTACGTCGG CCCGGTCGAT
CCGGTGCGCG ACGAGGTGGT CGGTCCGGCC GGCCCCACCA CGGCCACGCG CATGGACAAG
TTCACCGAGA CGATGCTCGC CAAGACCGGC CTGATCGCCA TGGTCGGCAA GGCCGAGCGC
GGTCCGGTCG CCATCGAGGC CATCCAGAAG CACAAGTCGG CCTACCTGAT GGCCGTGGGC
GGCGCGGCCT ACCTTGTGTC CAAGGCCATC CGCGGCGCGA AGGTGCTGGC ATTCGAAGAC
CTGGGCATGG AAGCCATCTA CGAATTCGAC GTGAAGGACA TGCCCGTCAC CGTGGCGGTC
GACAGCGCGG GCACCTCGGT GCACAAGACC GGCCCGGCGG AATGGCAGGC CAAGATCGGC
AAGATCCCGG TCGCCGCGGC GTGA
|
|---|
| Protein sequence | MTVIRQEDLI QSVADSLQYI SYYHPMDYIT ALGQAYEQEQ SPAAKDAIAQ ILTNSRMCAE
GKRPICQDTG IVTVFLKVGM NVRWDGATMS LEDMVNEGVR RAYNDQDNKL RASVLADPAG
KRTNTKDNTP AVINMSIVPG DTVDVIVAAK GGGSEAKSKF VMLNPSDSIV DWVLKTVPTM
GAGWCPPGML GIGIGGTAEK AMLLAKEALM EPIDIQDLIA RGPSNRAEEL RIELYEKVNA
LGIGAQGLGG LATVLDVKIK DYPTHAANLP VAMIPNCAAT RHAHFTLDGS GVAKLEAPDL
SQWPKVEWAP NTETSKRVDL NALTPEEVAS WKPGQTLLLN GKMLTGRDAA HKRIADMLAR
GEQLPIDFTN RVIYYVGPVD PVRDEVVGPA GPTTATRMDK FTETMLAKTG LIAMVGKAER
GPVAIEAIQK HKSAYLMAVG GAAYLVSKAI RGAKVLAFED LGMEAIYEFD VKDMPVTVAV
DSAGTSVHKT GPAEWQAKIG KIPVAAA
|
|---|
| |