| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1914 |
|---|
| Symbol | |
|---|
| ID | 1220754 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 2094395 |
|---|
| End bp | 2097058 |
|---|
| Gene Length | 2664 bp |
|---|
| Protein Length | 887 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637238308 |
|---|
| Product | phage-related tail transmembrane protein |
|---|
| Protein accession | NP_520035 |
|---|
| Protein GI | 17546633 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5283] Phage-related tail protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.575173 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.748507 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG CCCGCCGCCT GCGCCTGGAG GTGGTGCTGG CCGCCGTGGA CAAGGCCACG
CGGCCGCTGC GCAACCTGAT GAACGCCAAC AACGACCTGG CCCGGGCCGT GAAGGCCACG
CGCGCGCAGC TCAAGGACCT GGAACGCACA CAGGCCAGCA TCGACACCTT CCGCAAGCTG
TCGCGGGACG CGGCCATCAC CGGCAACCAA CTGAAGGCGG TGCGCGGGCG GGCGGATGAG
CTGGCCCGCC AGCTCAAGCA GACCAGCGAG CCATCTGCCG CGCTCTCAAA AGCATTCGAG
GCCGCCCGGC GCGAGGCGCA GGCGCTCAAG TCAAAGCAAT CGGAATTGTC TGAAAAACTG
CACCAGGTGC GCGGGCGGTT GTCCGAGGCC GGCATCGGCA CGCAGAGCCT CGCGGAGCAC
CAGCGTGCGC TCAAGACCCG CATTGCCGAG ACCAACCAGC AACTGGAGGC GCAGACCCAG
CGCATGGCGG CCGTGACCGC GCAGCAGCGC CGCATGGCCA CCGCGCACCA GGCAGCGGAC
AAGGTGCGTG CCAAGGCCGG CAGCCTGGCC GCCGCCGGCG CGGGCGCCAC CGCAGCCGGC
GTGGCGGCCG GTGCTCCGTT GCTCAAGGGC CTGGGGGAAG CCAAGCACTA CGACCTGGAG
AAGTTGCGCA TTGGCGCGCT GGGCCTGGGT GACCAGTCGA CCAAGGAAGC GCTGGCGTTC
GCGCAGCAGA TGAAGGCGTA CGGCGTCAGC CAGGTTGAGA AGGCCGAACT GATGCGCGAC
GCCATGAGCG TGTTCGCGGA CACCCACCAC GCCGAAATGG TGATGCCGAC GCTCGCCAAG
ATGAAGTTCG CCAACGCGGC CGTGTTCGGC CAGGCCGAGG GCGCGGAGAA CGAGCGCAAG
TTCGTGGACA TGCTCAAGGT CATTGAGCTG CGCGGCGGCT TGGCAAGCGA GGCCGAGTTC
AAGAAGCAGG CCGACATGGT CCAGAAGGTC ATCACGGCGA CCGGCGGGCG CGTGCAGGCT
GACGAATGGC TCAACGTCAT TAAGACAGGT GGCCTCGCCG CCAAGGGCGC CGATGACAAG
GCGTTCTACT ACACGCTGGA ACCGCTGGTG CAGGAGATGG GCGGCAACCG CGTGGGCACC
GCCATGATGA GCGCCTATCA GAACCTGTAC CAAGGCAAGA CGACGAAGCG GGCGCTGCAC
AACCTGGACA AGTTCGGCCT GATCGCCGAC CGGAGCAAGG TGCAGGAGGA CAAGGCCGGC
CAGGTGTCGT TCATGGACCC GGGCGCACTC AAGGGCGCGG ACCTGTTCCG GCAGAACCAG
TTCGCCTGGT TGGAGCAGGT GCTGCTGCCG ACGCTGGCTG CCAAGGGGAT CACCCGTCGC
AAGCAGATCG AGGACGCAAT CGGCAGCGTC TTTTCGAACC GCACGGCGTC GGGCCTGTTC
GCGCAGATGT ACATGCAGCG GGAACAGATC CACAAGAACA TGCGCCTGAA CGAAGGCGCT
GCCGGCATCG ATCAGCTTGA AGCCACTGCA AAGGGCACTG CCCAAGGCCA GGAGCTGGAC
ACGCTGGCGA AGGTGCACGA CCTGGAGAAG GCGCTGGGCG AAAAGGTGTT GCCGCTGTAT
GCGCGCGGCC TGGAACTGGT CGGCAAGGCC GCCGAGGGCG TCACCTCGTT CATGCAGAAC
CACCCAACGC TGGCCAAGGC CGTCGCCGTC GCGGTCGGCG CGCTGGCGGC TTCCCTGCTG
GTGCTGGGGC CGATCATGCT GGCCGTGGCG TCCGTGCTGG GGCCCTACGC CATGCTGCAC
ATCTTGTGCG CCAGGCTGGG CGTTACGGGC GGCGTGCTGT CGGGCGTGTT GCGTGGTCTG
GCGGGTGCCT TCAGCGTAGT CATGCGCGCC GTGGCGGTGC TGGGCCGGGT GCTGCTGATG
AACCCGATTG GCCTGCTGGT GACGGCAATT GCGGTCGCGG CCTACCTGAT CTACCGGAAC
TGGGAGCCGA TCAGCGAGTT CTTCTCGGGG TTGTGGCAGC AGGTGAAGAC GGCGTTCGAC
GGCGGTATCG CCGGCGTGTC CGCGCTGATC CTGAACTGGT CGCCGGCAGG CCTGTTCTAC
GCCGCGCTCG CGCCGGTGTT GCAGTGGTTC GGGTTCGACG TGCCGGCCAA GTTCACCGAG
TTCGGCGCCA ACATCGTGCA GGGCCTGGCC AACGGCATCC GCAGCGCCAT CGGCTGGGTC
ACGGATGCCG TGGGCAGCGT GGCAAGCGGT GCGATCGCGG CCTTCAAGAG CCTGATGGGC
ATCCACTCGC CGTCCCGCGT CTTCGCCGAG TTGGGCGGGT TCACCATGGC CGGGCTCGGC
GAAGGCCTCA CGCGCGGTCA GGAGGGGCCG CTGCAGGCCG TTCAGCGGGT GGCCGCCAGG
ATGACCGGTA TCGGCGCCGG CATCGCCATC GGTGCGGCGC CGGCCGTCGC ATCGCCGGTG
CGCTTCGACA CCCGGCCGCC GCTGGCCGCC AGCTCGGTCT CTGGCACCGC GGCGCCGGCT
GCCGCCGCGC CCATCACCAT CGTCATCAAC CCGCCGGCGG GTAGCGATGA ACGGCTGATT
GCGCGCCTGG TGGAAGACCG GCTGCGCCAG ATCGAGAACC AACGCGCGGC GCGTGGACGC
TCGCGCCTCA CCGATACGGA TTGA
|
|---|
| Protein sequence | MSDARRLRLE VVLAAVDKAT RPLRNLMNAN NDLARAVKAT RAQLKDLERT QASIDTFRKL
SRDAAITGNQ LKAVRGRADE LARQLKQTSE PSAALSKAFE AARREAQALK SKQSELSEKL
HQVRGRLSEA GIGTQSLAEH QRALKTRIAE TNQQLEAQTQ RMAAVTAQQR RMATAHQAAD
KVRAKAGSLA AAGAGATAAG VAAGAPLLKG LGEAKHYDLE KLRIGALGLG DQSTKEALAF
AQQMKAYGVS QVEKAELMRD AMSVFADTHH AEMVMPTLAK MKFANAAVFG QAEGAENERK
FVDMLKVIEL RGGLASEAEF KKQADMVQKV ITATGGRVQA DEWLNVIKTG GLAAKGADDK
AFYYTLEPLV QEMGGNRVGT AMMSAYQNLY QGKTTKRALH NLDKFGLIAD RSKVQEDKAG
QVSFMDPGAL KGADLFRQNQ FAWLEQVLLP TLAAKGITRR KQIEDAIGSV FSNRTASGLF
AQMYMQREQI HKNMRLNEGA AGIDQLEATA KGTAQGQELD TLAKVHDLEK ALGEKVLPLY
ARGLELVGKA AEGVTSFMQN HPTLAKAVAV AVGALAASLL VLGPIMLAVA SVLGPYAMLH
ILCARLGVTG GVLSGVLRGL AGAFSVVMRA VAVLGRVLLM NPIGLLVTAI AVAAYLIYRN
WEPISEFFSG LWQQVKTAFD GGIAGVSALI LNWSPAGLFY AALAPVLQWF GFDVPAKFTE
FGANIVQGLA NGIRSAIGWV TDAVGSVASG AIAAFKSLMG IHSPSRVFAE LGGFTMAGLG
EGLTRGQEGP LQAVQRVAAR MTGIGAGIAI GAAPAVASPV RFDTRPPLAA SSVSGTAAPA
AAAPITIVIN PPAGSDERLI ARLVEDRLRQ IENQRAARGR SRLTDTD
|
|---|
| |