Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1893 |
Symbol | |
ID | 1220732 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 2078915 |
End bp | 2080516 |
Gene Length | 1602 bp |
Protein Length | 533 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637238286 |
Product | hypothetical protein |
Protein accession | NP_520014 |
Protein GI | 17546612 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0317418 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.65749 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGGCTGG GCGGATTGAT TCTGCTGCTG GCCCTGGGTT CGGTGCTGCT GACCATGGCG AACGCCATGT ATTCCAGTTA TCGCACGCAG CGCGATCTGC TGATCCGGAA TGCGCTGGAA GCCAACCGCG TCTATGCGGC CAAGCTGGCC GAGTCGACCG ATTTGGCCAT CGGCGTCACG CGGCAGGAGT TGGCCTATGG CGCGGGCCTC CTGGCCGCGC ACATGGAGGA TCCCGCGCGG CTGACGGAAG AGGCCGAGCG GTTGCGCCAG CAGATGGGCA GCCTCAACTC GGTCGTCATC GTGCGCCGCG ACGGCGCGGT CATCGGGGCT TCGCCGGCCA GCCTGCAGCT GAAATCCATG CGCAGCGACT GGGGCCGCCG GCTGCTCGAT TCCCGCATTC CCGAGATCAG CCGGCCGTTC CGGGCGCCGA CGGGCCGGCT GCTCATCTTC CTGTCCCATC CCGTGATCGA TGGCCAGGGG CGCCTGCTGG GCTATGTCGG CGGCACGATC TATCTGAACG AGAAGAACCT CCTCCACACG ATCTTCGTCC ATCACTACTA TCGCGACGGT TCGTATATCT ATGTCGTCGA TCGCGATGGC ACGGTCATCT ACCATCCGAA CAGCGGCTAT GTCGGCGATA TGACCGGCGC GAACCCGGCG GTGGCCGAAG TGATGCTGGG ACATGCGGGG GCGCAGCGCA TCCGGAGCCT GCACGGGATC GACATGCTGG CCGGCTATGC GCCGGTGGCG TCGACGGGGT GGGGCATCGT GGCGCAGAAG CCCACCGAGA CAACGCTGAG CGATCTCAAT GGCCTGATGC TGGTGACCCT GTCGCACAGC ATTCCGTTGT TCGTGCTGTC CATCGTCTTC ATCTGGTGGT TTGCCAGGTC GATCTCCCGC CCGCTCGTCG AGCTGGCCAG CCAGGCCCGG CTGGTGGCGA CGCCGGAGCG CCTGGAGCGG ATCAAGACCG TGTCTTCCTG GTACATCGAA GCCCATCGTC TCAAGCGCGC GCTGCTGCGC GGCACGCGCC TGACCAGCAC TCGCATGGCC AGGCTCAACC TCGAGGCGCT CACCGATCCC CTGACCGGCC TGTACAACCG CCGCGGCGTC GCGAATGCGC TGCGCCTGCA CGCGGGGCGG CACCAGCCGT TTTCGGCCGT CACGCTGGAC GTCGATCACT TCAAGCGGAT CAACGACCGG CACGGGCACG ATGTCGGCGA CCAGGTGCTC CGGCACCTTG CCGCGCTGAT CCGGGAGCAG GCCAGGCATG GCGATATCAC CGGCCGCATC GGTGGGGAGG AGTTCATCCT CCTGCTGCCC GACGCCACGC CGGACGGTGC CTTCAGGACG GCCGAGCGGC TGCGCCTGGC CGTGGAGGCG CGGCCGAACC CGGCGGGGCA GGTGGTCACG GTCTCGCTCG GGGTGGCGCA CTATCCGCAG TCAGCGGGGG AGGTCGATGC CGTCCTGAAA CTGTCCGATC TTGCGCTCTA TCAGGCCAAG CGCGACGGGC GCAACCGGAC CGTGGTCTAC CAGGCGGAGC GTGCGGACGG GCCCGCCGAC CTGGAGCCGG CCTCGCGGGC ACGGGCTGAG GAGGGCGGCT GA
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Protein sequence | MGLGGLILLL ALGSVLLTMA NAMYSSYRTQ RDLLIRNALE ANRVYAAKLA ESTDLAIGVT RQELAYGAGL LAAHMEDPAR LTEEAERLRQ QMGSLNSVVI VRRDGAVIGA SPASLQLKSM RSDWGRRLLD SRIPEISRPF RAPTGRLLIF LSHPVIDGQG RLLGYVGGTI YLNEKNLLHT IFVHHYYRDG SYIYVVDRDG TVIYHPNSGY VGDMTGANPA VAEVMLGHAG AQRIRSLHGI DMLAGYAPVA STGWGIVAQK PTETTLSDLN GLMLVTLSHS IPLFVLSIVF IWWFARSISR PLVELASQAR LVATPERLER IKTVSSWYIE AHRLKRALLR GTRLTSTRMA RLNLEALTDP LTGLYNRRGV ANALRLHAGR HQPFSAVTLD VDHFKRINDR HGHDVGDQVL RHLAALIREQ ARHGDITGRI GGEEFILLLP DATPDGAFRT AERLRLAVEA RPNPAGQVVT VSLGVAHYPQ SAGEVDAVLK LSDLALYQAK RDGRNRTVVY QAERADGPAD LEPASRARAE EGG
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