Gene RSc1885 details

Gene Information

• Locus tag: RSc1885
• Symbol: dppF2
• ID: 1220724
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: +
• Start bp: 2068864
• End bp: 2069865
• Gene Length: 1002 bp
• Protein Length: 333 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 637238278
• Product: oligopeptide ATP-binding ABC transporter protein
• Protein accession: NP_520006
• Protein GI: 17546604
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG4608] ABC-type oligopeptide transport system, ATPase component
• TIGRFAM ID: [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.0166615
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 0.740268
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACCACGC CGCTGGTGGA ACTCAAGCAG GTCGGCAAGC GCTTCGGCGA GCGCAGGATC 
GGCCCGGGTG GCCGTGTGCT GCAGCGCCTG GGCCTGGCGC AGCCGCCCGC TGTCGTACGC 
GCCGTCGATG GCATCGACCT GGCGATCCGG CCGGGCGAAG TGGTCGGCCT GGTCGGCGAG 
TCGGGCTGCG GCAAGTCGAC GCTCGGCCGC ATCGCGGCGG GGCTGATGCC GCCGTCCGAC 
GGCGAGGTGC GCGTCGACGG CAAGGCGCTC GTCGGCCTGC CCGCCGACGA AGCGCGCGCG 
GCCCGCCTGA AGATCCAGAT GATCTTCCAG GACCCGTACG CCAGCCTCAA CCCGCGCCTG 
CGCGTGGAAG ACATCGTCGG TGAGGCGGCG CGCGTGCACG GCCTGACCGA CCGCGCCGGC 
TTTGCCGACT ACGTGGCCGC GCAGATGCGG CGCGCCGGCC TCGACCCGGC CCTGCGCGAC 
CGCTATCCGC ACCAGTTCAG CGGCGGCCAG CGGCAGCGCA TCGGCATCGC CCGCGCGCTG 
GCGGTGCAGC CGTCGATGCT GGTGTGCGAC GAGGCGGTGG CGGCGCTGGA CGTGTCGATC 
CAGGCGCAGA TCCTGAACCT GTTCATGGAC CTGCGCGAGC AGCTGAACCT GACCTATCTC 
TTCATCAGCC ACGACCTCGG CGTGGTGGAG CACCTGTCGG ACCGCGTGGT CATCATGTAC 
CTGGGCCGCG TGGTGGAATC GGCCAGCGCG CAAGAGGTGT TCAGCCGCCC CAACCATCCG 
TACACGCAGA CGCTGCTGGC GGAGATTCCG CGCCTGTCTG CCCGGCACAA GACCTTCACC 
GCCCTCCAGG GCGAGATGCC GAGCCCGCTG AACCCGCCGT CCGGCTGCCA TTTCCACCCG 
CGCTGTCCGC ACGCCATGCC GCGCTGCACG ACCGAAGCGC CGACGCTGCG CGGCATTGCC 
GTCAACCATG TCAGCGCGTG CCACCTGAAC GACGGCCGCT AA 

 

Protein sequence

MTTPLVELKQ VGKRFGERRI GPGGRVLQRL GLAQPPAVVR AVDGIDLAIR PGEVVGLVGE 
SGCGKSTLGR IAAGLMPPSD GEVRVDGKAL VGLPADEARA ARLKIQMIFQ DPYASLNPRL 
RVEDIVGEAA RVHGLTDRAG FADYVAAQMR RAGLDPALRD RYPHQFSGGQ RQRIGIARAL 
AVQPSMLVCD EAVAALDVSI QAQILNLFMD LREQLNLTYL FISHDLGVVE HLSDRVVIMY 
LGRVVESASA QEVFSRPNHP YTQTLLAEIP RLSARHKTFT ALQGEMPSPL NPPSGCHFHP 
RCPHAMPRCT TEAPTLRGIA VNHVSACHLN DGR