Gene RSc1884 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1884 
SymboldppD2 
ID1220723 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp2067869 
End bp2068867 
Gene Length999 bp 
Protein Length332 aa 
Translation table11 
GC content72% 
IMG OID637238277 
Productoligopeptide ATP-binding ABC transporter protein 
Protein accessionNP_520005 
Protein GI17546603 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0431032 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.324708 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCCG CCGACCCGAC GCTGCAGGTG CGCAACCTGC GTACCCATTT CTTCACGCGC 
GACGGCGTGC TGCCGGCGGT GGACGACGTG TCGTTCTCGC TCGGGCGCGG GCGCATCCTG
GGGCTGGTGG GCGAATCGGG CTCGGGCAAG TCGGTGACAG GCTTTTCCAT CATGGGGCTG
GTCGATCCGC CCGGCCGCGT GGCGGGCGGC GAGATCCTGT TCCAGGGCCG CGACCTGGTC
CGGCTGCCGG CGCGCGAGCT GCGCAGGCTC CAGGGCAACC GCATCGCCAT GGTCTTCCAG
GACCCGATGA TGACGCTCAA CCCGGTGCTG CGCATCGAGG CCCAGATGGT CGAGGCTGTG
CGCGCGCACA GCGGCATGCG CCACGCTCAG GCCCGCGAGC ACGCGCGCGA CACGCTGGGC
CTGATGGGCA TTCCGAGTCC GGACGAGCGG CTGCGCGCGT ATCCGCATCA GCTCTCGGGC
GGCATGCGCC AGCGCGTGGC GATCGCCATC GCGATGCTGC ATCGCCCCGA CCTGATCATT
GCCGACGAGC CGACCACGGC GCTGGACGTG ACCATCCAGG CGCAGATCCT GTCGGAGGTG
CAAAAGCTGG CGCGCCAGCA CGGCACCGCG CTGATCTGGA TCACGCACGA CCTGTCCGTC
GTCGCCGGCC TCGCCGACGA GGTGGCGGTG ATGTACGCCG GCCGCATCGT CGAGCATGGC
CCGGTGGATG CCGTGCTCGA CGCGCCCCTG CATCCGTACA CCCGGGGCCT GATCGACAGC
CTGCCCAGCG AGAACCGGCG CGGCCGGCGC CTGCGGCAGA TCCCGGGCAT GACACCCAGC
CTGCTGGCGC TGCCGCCCGG CTGTGCCTTC GCGGCGCGCT GCCCGCGCGC CACCGAGGCC
TGCGGCGTAC GCCCGGAGAT CACACAGCAC AGCACCGGCC GCCTCGTGCG CTGCGTCCAC
CCCGACACGT TGTCTGCCGC CGCGCGGGAG GTCGCATGA
 
Protein sequence
MSAADPTLQV RNLRTHFFTR DGVLPAVDDV SFSLGRGRIL GLVGESGSGK SVTGFSIMGL 
VDPPGRVAGG EILFQGRDLV RLPARELRRL QGNRIAMVFQ DPMMTLNPVL RIEAQMVEAV
RAHSGMRHAQ AREHARDTLG LMGIPSPDER LRAYPHQLSG GMRQRVAIAI AMLHRPDLII
ADEPTTALDV TIQAQILSEV QKLARQHGTA LIWITHDLSV VAGLADEVAV MYAGRIVEHG
PVDAVLDAPL HPYTRGLIDS LPSENRRGRR LRQIPGMTPS LLALPPGCAF AARCPRATEA
CGVRPEITQH STGRLVRCVH PDTLSAAARE VA