Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1879 |
Symbol | |
ID | 1220718 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 2062166 |
End bp | 2063317 |
Gene Length | 1152 bp |
Protein Length | 383 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637238272 |
Product | putative amino acids-binding transmembrane protein |
Protein accession | NP_520000 |
Protein GI | 17546598 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.399388 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGGGC ATAAATCCGT CCTGCGCAAC CGCATCGCTT GCGCACTGTC CATGAGCCTG GCACTGGTCT GCGGCCAAGT GCTGGCAGAA CCGGGTATCA CCGACACCAA AATCCTGATC GGCCAGACCG CCGGCTTCAC CGGACCGGCC GGCGAGCAGG TCAAAGAGAT GACGCGCGGC GCCCAGCTGT ATCTCGACGC GGTGAACCGT GCCGGCGGCG TCTACGGCCG CAGGATCGAA CTGATCTCGG AAGACGACGG CTTCGATGCC AATGTCTCGA AGCAGCGCGC GCACACGTTG CTCACCGACA AGCAGGTCTT CGCGCTGTTC CTGTCGCGCG GCACGCCCAA TACCGAGGCC ATCATGAGCG AGGCGCACGC GGTCGGCGCA CCCATGGTGG CGCCGTCGAC GGGGGCATCG ATCTTCTTCG ACCGGCCCGA TCCGCTGGTG TTCGTGGTGC GCGCCAAGTA CCAGACCGAG ATCGCCGAGC TGGTCCACCA TTTCGAGACA CTGGGCCTGA AACGCCTGGC GCTGGTGAAC GTCAACGACT CGTTCGGCAA GGACACCGAG GCCGGATTCA CGACGGCCAC GCAACATCTG CCGCCCAGCA CACACCAGAT CGTCACCGTC GACCGGCTGA AGCCGAACAT CGAGACAGCG ACCGCGGAGA TCGGGAAATT CGCGCCCAAT GCCGTGATCC TGGCCTGCGC GGGCACCACC GCGCAAGCAC TGGCCGAAGC GCTCACCAAG CACGGCACCG TGTCGCAGAT GGCAACGCTG TCGAACAATT CGAGCACGGC CTTCGCGCGA TCGCTGGGGA ACATGGCGCG CGGCATGATG GTAACGCAGG TGATGCCGTC GCCGGTGCGC GCGACCTCGC CGATCGGCCG TGAGCTGACC GCCAGCGCCA AGGCTGCCGG CGTGATGCCG TCCTACGGCA TGATGGAAGG TTATGCCTCC GCCAAGCTGC TGGTCGAAGG GCTCAAGCGC GCCGGCAAGG CGCCGACTCG CGCCAGCTTC GTGGCCGGGC TGGAAGCCGC CGGCACGATC GACCTGGGCG GCCTGGACAT CCGCAACGGC CGCAACAACC ACAAGGGTTC GAGCTTTGTG GAAATCACGG TGATCGGTCC GCACGGCACG TTCATCAAAT AA
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Protein sequence | MTGHKSVLRN RIACALSMSL ALVCGQVLAE PGITDTKILI GQTAGFTGPA GEQVKEMTRG AQLYLDAVNR AGGVYGRRIE LISEDDGFDA NVSKQRAHTL LTDKQVFALF LSRGTPNTEA IMSEAHAVGA PMVAPSTGAS IFFDRPDPLV FVVRAKYQTE IAELVHHFET LGLKRLALVN VNDSFGKDTE AGFTTATQHL PPSTHQIVTV DRLKPNIETA TAEIGKFAPN AVILACAGTT AQALAEALTK HGTVSQMATL SNNSSTAFAR SLGNMARGMM VTQVMPSPVR ATSPIGRELT ASAKAAGVMP SYGMMEGYAS AKLLVEGLKR AGKAPTRASF VAGLEAAGTI DLGGLDIRNG RNNHKGSSFV EITVIGPHGT FIK
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