| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1872 |
|---|
| Symbol | dnaQ |
|---|
| ID | 1220711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 2056345 |
|---|
| End bp | 2057073 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637238265 |
|---|
| Product | DNA polymerase III subunit epsilon |
|---|
| Protein accession | NP_519993 |
|---|
| Protein GI | 17546591 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
|---|
| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01406] DNA polymerase III, epsilon subunit, Proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000816139 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACAGA TCGTCCTCGA TACCGAAACC ACCGGCCTGA ATGCCGCCAC CGGCGACCGC
GTGATCGAAA TCGGCTGCGT GGAGCTGGTC AACCGGCGGC TGACCGGCCG CAACCTGCAT
TTCTACCTCA ACCCCGAGCG CGAGATCGAC GCCGGCGCCA TGGCGGTGCA CGGCATTACC
AACGAGTTCG TCGCCGACAA GCCCAAGTTC GCCGAGGTCG TCGACGAGAT CCGGGACTAC
GTGCAGGGCG CCGAGGCGAT CATCCATAAC GCCGCGTTCG ACCTGGGCTT CCTCGACATG
GAGTTCAAGC GGTTGGGGCT GCCGCCGTTC CGCGAGCATC TGGCCGGCCA CATCGACACG
CTGCTCGATG CGCGCCGGAT GTTCCCCGGC AAGCGCAACT CGCTGGACGC GCTGTGCGAC
CGCCTCGGCG TGAGCAACGC CCACCGTACG CTGCACGGCG CCTTGCTGGA CGCGGAACTG
CTGGCCGAAG TCTATCTGGC CATGACGCGC GGCCAGAACA CGCTGGTGAT CGACATGTTG
GAGAGCGGCG AGACGGCCGC CGCCGAGGCC GCCGTGATCG ACCTGAGCGG CCTGGAGCTG
CCGATCCTGC TGGCGACCGA AGCGGAAGCC GCGGCGCACG CGACCGTGCT CAAGGAGATC
GACAAGGCCA GCGGCGGCAA GACGGTCTGG CTTCGGGATG CTCCGGAGGC CGCGCCGCAG
GCGGGCTGA
|
|---|
| Protein sequence | MRQIVLDTET TGLNAATGDR VIEIGCVELV NRRLTGRNLH FYLNPEREID AGAMAVHGIT
NEFVADKPKF AEVVDEIRDY VQGAEAIIHN AAFDLGFLDM EFKRLGLPPF REHLAGHIDT
LLDARRMFPG KRNSLDALCD RLGVSNAHRT LHGALLDAEL LAEVYLAMTR GQNTLVIDML
ESGETAAAEA AVIDLSGLEL PILLATEAEA AAHATVLKEI DKASGGKTVW LRDAPEAAPQ
AG
|
|---|
| |