Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1854 |
Symbol | |
ID | 1220692 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 2036828 |
End bp | 2038255 |
Gene Length | 1428 bp |
Protein Length | 475 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637238246 |
Product | putative outer membrane multidrug resistance lipoprotein |
Protein accession | NP_519975 |
Protein GI | 17546573 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.100642 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTATTTTG ATTCGTCCTT TCCGGCAGAC ACGCTTCGCT GGCTGCGCGC GGGTGTCGTC CTGCCGCTGG CCTTGGTGGC AGGCGCCTGC GCTCAGTTCC CCGAGGCCAG CGAGCGGCCC ACCCCGCAAA CACCGGAAGG GCTGCACAGC GCGTCCAGCC TTGCGGCATC TGCCGTCGCG TGGCCCGATG ATCATTGGTG GCAAGCCTAT GGCGATGCCC AGCTCAATGC CCTGATTGGA GAAGCACTGC GCGACTCGCC GGACATGGCC GCTGCCGCCG CCCGCCTGCG CGGGGCCGAA GCTGCCGGGG CCGTGGCGGG TGCCGCCTTG CTTCCTCAGG TGAGCGCCAA CGCCTCCGCT GCCCGCCAAC GCCAGAGCGG CTCTAGCGAC TGGAATGAGG TCGGCCGCGC CACCCTCGAT TTCAGTTGGG AAATCGACTT CTGGGGCCGC AACCGCGCGA GTCTGGCCGC CGCGACCTCC GACCTGGAAG CCAGCCGCGC CGACGCGGCC CAGGCCCGGC TGACGCTGGC GAGCGCCATC GCCTCCAGCT ACGCCGACCT GGCCGGATTG TATGCAGTGC GGGACGCCGA TGAAGCGGCG CTGGCCGTGC GTCGGCACAG CGCGCAACTG TTCACCGAAC GTTTTGCGAG CGGGCTGGAA ACCCGCAGCG GCGTCAAGCA GGCCGAAGCC CTGTTGGCCA GCGCCGAGGG CGAGTTGCTG CGCGTGGACG AAAGCATCGG CCTCACGCGC CATGCCCTGG CCGCGCTGGT GGGGGCGGGG CCGGATCGGG GCCTGACGAT CCGGCGGCCC AGCGTCGCCA TCCGCAGTCC CGAGGGTCTG CCTGCGGAGC TGGCCGTGAA TCTGCTGGGG CGCCGCCCGG ACGTGGTGGC CGCGCGCCTT CAAGCAGAGG CGCAGGTGCA TCGCATCGAC AGCAAGCGCG CCGAGTTCTA CCCCAACGTC AATCTCTCCG CGTTCATCGG CTTCGAGTCC ATCGGGCTGT CCAACCTGTT CAAGTCGGGT TCACGCATCG GCAGCATCGG GCCGGCGGTG TCGCTGCCCA TCTTCAACGG CGGTCGCCTG CGCGGGGAGT TGAAGCGCGC GCAGGCGTCC TATGACGAGG CCGTCGCCAA CTACAACCGC ACGCTGACCC AGGCCCTGCA GGACGTGGCC GATGCCTGGC TGAGCCGCAA GGCATTGGCT CCCCGGCTGG CGAAGGTGGA AGAAGCCTTC AGGGCCGCCG AGCAAGCCTA CCGCGTCACA CTCAACCGCT ACGAAGGCGG CCTCGCCAGC TACCTGGAAG TCCTCACCGC GCAGGACACC CTGCTGACCA ACCAGCGTGC CCTGACCGAT CTGCAATCCC GCGCCTTCAC GCTGGACGTT GCCATGACCC GCGCCCTGGG CGGCGGCTAC CGCGCGCCCC GCAGCTAA
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Protein sequence | MYFDSSFPAD TLRWLRAGVV LPLALVAGAC AQFPEASERP TPQTPEGLHS ASSLAASAVA WPDDHWWQAY GDAQLNALIG EALRDSPDMA AAAARLRGAE AAGAVAGAAL LPQVSANASA ARQRQSGSSD WNEVGRATLD FSWEIDFWGR NRASLAAATS DLEASRADAA QARLTLASAI ASSYADLAGL YAVRDADEAA LAVRRHSAQL FTERFASGLE TRSGVKQAEA LLASAEGELL RVDESIGLTR HALAALVGAG PDRGLTIRRP SVAIRSPEGL PAELAVNLLG RRPDVVAARL QAEAQVHRID SKRAEFYPNV NLSAFIGFES IGLSNLFKSG SRIGSIGPAV SLPIFNGGRL RGELKRAQAS YDEAVANYNR TLTQALQDVA DAWLSRKALA PRLAKVEEAF RAAEQAYRVT LNRYEGGLAS YLEVLTAQDT LLTNQRALTD LQSRAFTLDV AMTRALGGGY RAPRS
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