Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1834 |
Symbol | |
ID | 1220672 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 2005547 |
End bp | 2007154 |
Gene Length | 1608 bp |
Protein Length | 535 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 637238226 |
Product | putative transmembrane protein |
Protein accession | NP_519955 |
Protein GI | 17546553 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.47508 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.564682 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCAT CGTCGGATCC GCACGTCATC TTCGTCGGCA GCGGCATCAA CTCGCTGGTC AGCGCGGCGC TGCTGGCCAC GCGCGGCAAG CGTGTGCTGG TGCTCGAGCG CAATGACCGG CTCGGCGGCT GCATCCGCAC CGAAGAGCTG TTTCCCGGCT ACCACCATGA GGTGATGTCT TCGTGGTACC CGCTGTTCGT CGGCAGCCCG GGCTATGCCG AGCTCAAGCC CGCGCTGGAG CAGGCGGGGC TGGCGTTCCT CTGCCCCGAC TACACCACGG GCCTGGTCTG GCCGGACGGC CGCGGCCTGG CGCTCAAGCA GGATCTGAAC GATGCGGTGC AACGCCTGGA GGCCCTGGCG CCCGGAGACG GCGCGGCCCT GGGCGCCATG GCCGCGCGCC TGTTCGGCCC CGATGCCGCG CTCACGTTCG GCCTGCTGGG CCAGAATCCG TACGGCTGGG CGATGCTCAA GCTGCTGTTC GGGCAGTGGC GCCAGCGCGG CACCGACGGC CTGGCGGCCT TCGCGGCCGA CGCGCTGGAG ACCTTCCGGC GCTGGTCGGA ACGCACGCTG CGCTCCGACC TGGCCCGCGC GCTGATCGCG CCGTGGGTAC TGCACTCCGG GCTCGGCCCC GATGACGCCG GATCGGCCCT GATCGGCAAG CTGACCTTCG CCTCGGTGGT CAGCGGCGGC ATGCCCGTGG TCAAGGGCGG CGGCAGCCGG CTGGTCGAAG CGCTCGCGCG GGTCATCGAG CAGCACGGCG GCACGCTGAT GACCGGCACG CCGGTCGAGC AGGTGCTGAC CGAGGGCCAG GGCCGCCGCC GGCGCGCCAC CGGGGTGGCA GTGACCGGGG GCCGGCGCTT GCGTGCCCAG CAAGCCGTCG TCTGCAACGT CACGCCCCAG CAGCTGTACG GCCGCCTGCT GCCCGAGATG CCGCAGCCGC TGCGCGAGCG CGCCGAAGGC TATCGCTACG GGCGCGGCGA CATGCAGATC CACTTCGCGC TGAACGCGCC GCCCGCCTGG CGCGAGGCGG AACTCTGCAA GGTGCCGCTG GTGCACCTGA CCGAGAGCCT GGAGCAGGTC TGCGCCTCGG TCACGCAAGC CAACAACGGC CTGCTGCCGA GCCGCCCCAC CCTCGGCATC GGCCAGCCGA CGGTGGCCGA CCCATCGCGC GCGCCCGCGG GCGGCTGGAT CCTGTGGATC CAGATGCAGG AGCTGCCGAC GCGGCTCAAG GGCGATGCGG CGGGCGAGAT TCCCGTGCCC GCCGACGGCC GCTGGAACGA AGCGGTGCGC GAAGCGTTCG CGGACCGCGT GCAGGCACGG CTCGAACGTG TCATGCCGGG GCTCGCCGAA CGCATCGTCG GCCGGCGCGC CTATTCGCCG GCGGACCTGG AGGTGTTGAA CTGCAACCTG GTCGGCGGCG ATCCTTACTC CGGCGTCTGC TCGCCCGACC AGTTTTTCTG GCTGCGTCCG TTCGCGGGCA GCCAGGGCGC CCGCGCGCAC CGCACGCCGC TGGCCAACGT GTTCCACATC GGCGCCAGCA CGCACCCGGG ACCGGGGCTG GGCGCCGGCT CGGGGTTCAT GGTGGCCCAG CACCTGAGTC CGCGCTAG
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Protein sequence | MTASSDPHVI FVGSGINSLV SAALLATRGK RVLVLERNDR LGGCIRTEEL FPGYHHEVMS SWYPLFVGSP GYAELKPALE QAGLAFLCPD YTTGLVWPDG RGLALKQDLN DAVQRLEALA PGDGAALGAM AARLFGPDAA LTFGLLGQNP YGWAMLKLLF GQWRQRGTDG LAAFAADALE TFRRWSERTL RSDLARALIA PWVLHSGLGP DDAGSALIGK LTFASVVSGG MPVVKGGGSR LVEALARVIE QHGGTLMTGT PVEQVLTEGQ GRRRRATGVA VTGGRRLRAQ QAVVCNVTPQ QLYGRLLPEM PQPLRERAEG YRYGRGDMQI HFALNAPPAW REAELCKVPL VHLTESLEQV CASVTQANNG LLPSRPTLGI GQPTVADPSR APAGGWILWI QMQELPTRLK GDAAGEIPVP ADGRWNEAVR EAFADRVQAR LERVMPGLAE RIVGRRAYSP ADLEVLNCNL VGGDPYSGVC SPDQFFWLRP FAGSQGARAH RTPLANVFHI GASTHPGPGL GAGSGFMVAQ HLSPR
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