Gene RSc1834 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1834 
Symbol 
ID1220672 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp2005547 
End bp2007154 
Gene Length1608 bp 
Protein Length535 aa 
Translation table11 
GC content73% 
IMG OID637238226 
Productputative transmembrane protein 
Protein accessionNP_519955 
Protein GI17546553 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1233] Phytoene dehydrogenase and related proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.47508 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.564682 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCAT CGTCGGATCC GCACGTCATC TTCGTCGGCA GCGGCATCAA CTCGCTGGTC 
AGCGCGGCGC TGCTGGCCAC GCGCGGCAAG CGTGTGCTGG TGCTCGAGCG CAATGACCGG
CTCGGCGGCT GCATCCGCAC CGAAGAGCTG TTTCCCGGCT ACCACCATGA GGTGATGTCT
TCGTGGTACC CGCTGTTCGT CGGCAGCCCG GGCTATGCCG AGCTCAAGCC CGCGCTGGAG
CAGGCGGGGC TGGCGTTCCT CTGCCCCGAC TACACCACGG GCCTGGTCTG GCCGGACGGC
CGCGGCCTGG CGCTCAAGCA GGATCTGAAC GATGCGGTGC AACGCCTGGA GGCCCTGGCG
CCCGGAGACG GCGCGGCCCT GGGCGCCATG GCCGCGCGCC TGTTCGGCCC CGATGCCGCG
CTCACGTTCG GCCTGCTGGG CCAGAATCCG TACGGCTGGG CGATGCTCAA GCTGCTGTTC
GGGCAGTGGC GCCAGCGCGG CACCGACGGC CTGGCGGCCT TCGCGGCCGA CGCGCTGGAG
ACCTTCCGGC GCTGGTCGGA ACGCACGCTG CGCTCCGACC TGGCCCGCGC GCTGATCGCG
CCGTGGGTAC TGCACTCCGG GCTCGGCCCC GATGACGCCG GATCGGCCCT GATCGGCAAG
CTGACCTTCG CCTCGGTGGT CAGCGGCGGC ATGCCCGTGG TCAAGGGCGG CGGCAGCCGG
CTGGTCGAAG CGCTCGCGCG GGTCATCGAG CAGCACGGCG GCACGCTGAT GACCGGCACG
CCGGTCGAGC AGGTGCTGAC CGAGGGCCAG GGCCGCCGCC GGCGCGCCAC CGGGGTGGCA
GTGACCGGGG GCCGGCGCTT GCGTGCCCAG CAAGCCGTCG TCTGCAACGT CACGCCCCAG
CAGCTGTACG GCCGCCTGCT GCCCGAGATG CCGCAGCCGC TGCGCGAGCG CGCCGAAGGC
TATCGCTACG GGCGCGGCGA CATGCAGATC CACTTCGCGC TGAACGCGCC GCCCGCCTGG
CGCGAGGCGG AACTCTGCAA GGTGCCGCTG GTGCACCTGA CCGAGAGCCT GGAGCAGGTC
TGCGCCTCGG TCACGCAAGC CAACAACGGC CTGCTGCCGA GCCGCCCCAC CCTCGGCATC
GGCCAGCCGA CGGTGGCCGA CCCATCGCGC GCGCCCGCGG GCGGCTGGAT CCTGTGGATC
CAGATGCAGG AGCTGCCGAC GCGGCTCAAG GGCGATGCGG CGGGCGAGAT TCCCGTGCCC
GCCGACGGCC GCTGGAACGA AGCGGTGCGC GAAGCGTTCG CGGACCGCGT GCAGGCACGG
CTCGAACGTG TCATGCCGGG GCTCGCCGAA CGCATCGTCG GCCGGCGCGC CTATTCGCCG
GCGGACCTGG AGGTGTTGAA CTGCAACCTG GTCGGCGGCG ATCCTTACTC CGGCGTCTGC
TCGCCCGACC AGTTTTTCTG GCTGCGTCCG TTCGCGGGCA GCCAGGGCGC CCGCGCGCAC
CGCACGCCGC TGGCCAACGT GTTCCACATC GGCGCCAGCA CGCACCCGGG ACCGGGGCTG
GGCGCCGGCT CGGGGTTCAT GGTGGCCCAG CACCTGAGTC CGCGCTAG
 
Protein sequence
MTASSDPHVI FVGSGINSLV SAALLATRGK RVLVLERNDR LGGCIRTEEL FPGYHHEVMS 
SWYPLFVGSP GYAELKPALE QAGLAFLCPD YTTGLVWPDG RGLALKQDLN DAVQRLEALA
PGDGAALGAM AARLFGPDAA LTFGLLGQNP YGWAMLKLLF GQWRQRGTDG LAAFAADALE
TFRRWSERTL RSDLARALIA PWVLHSGLGP DDAGSALIGK LTFASVVSGG MPVVKGGGSR
LVEALARVIE QHGGTLMTGT PVEQVLTEGQ GRRRRATGVA VTGGRRLRAQ QAVVCNVTPQ
QLYGRLLPEM PQPLRERAEG YRYGRGDMQI HFALNAPPAW REAELCKVPL VHLTESLEQV
CASVTQANNG LLPSRPTLGI GQPTVADPSR APAGGWILWI QMQELPTRLK GDAAGEIPVP
ADGRWNEAVR EAFADRVQAR LERVMPGLAE RIVGRRAYSP ADLEVLNCNL VGGDPYSGVC
SPDQFFWLRP FAGSQGARAH RTPLANVFHI GASTHPGPGL GAGSGFMVAQ HLSPR