Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1779 |
Symbol | |
ID | 1220617 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1914456 |
End bp | 1916150 |
Gene Length | 1695 bp |
Protein Length | 564 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637238171 |
Product | activation/secretion signal peptide protein |
Protein accession | NP_519900 |
Protein GI | 17546498 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2831] Hemolysin activation/secretion protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000346081 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGTCTG CTGTTTTACG TGCCGCAGTT CTCTGTGCCG GTACGGCAAG TTCGTTTGCG CTCGCGCAAG TCGCCCCGGC GCCTGTCAGC GGTCCCGGTC CTGAAGTCCA ACGCCTGCAA GAGCAGCAAG CCGACCAAGC CCGCGATCGC GCCAACGCCC GCCCCGACGT CTTCACGCCG CCTGCGCCAA CTCAGGCGAT CTCACTGTCT GCGTTGCCCA AGGAAACACC GTGCTTCCCC ATCCAGGGCA TCGTTCTCGA AGACAACGTC TTCAACTGGC TGCCCTACCT GCTCCAGCCC GTCAACGGCC AGTGCGTGGG CAAGCAGGGG TTGGAAGCCA TCGAGCTTCA GGTCAACAAC GCGCTCATCG AGCACGGCTA TGTCACCTCG CGCGTGCTGA TTCCGCAGCA GAACCTGGCC GAGGGCGCGC TGCGGCTCAA GGTGTTGCCC GGCCGCATTG GCGCCGTGCG CAATGCGTCG GATGACAACA TAGGCTGGGC ACGCATGGCC CTGCTGGCCG GGCCGGGCGA TCTGCTGAAC CAGCGCGACC TGGACCAGGC GCTGGAAACC GTCCGCCGTC TGCCGGGCCA GTCGGAGGCG AGTTTCGACA TCGTGCCCGG CGCGCAGGTC GGCGAATCGG ACATCGTGCT CAAGCCAGGC ACCGAGAAGC GCTGGCACGC CACGCTGTCG GCGGACAACA CCGGCATGAA GAACACCGGC AAGTACCAGA TGAGCGGCTC GCTGGTCATC GATTCGCCGC TGCATCTGTA TGACCAGTTG GCGATTTCCG CATCGTCCAA TACGGACCGT GGCGCGGCCA CGCAGGGCAC GCGCTCGTAC AGCATCAACT GGAGCGTGCC GGTCGGCTAT GCGACGGTGT TCGTGGGGGC CAACCGGTCG CGCTATCGCC AGACCGTGGC CGGGTTCGAA GACCCGATCG TCTACAGCGG CCAGAGCTCC GAGGTGAACC TGGGGATCAG CGGGGTGCTG CATCGCGATG CCACGTCCCG CACCGGCGCG CAGTTCAAGG TCTTCCGCAA GATCAACCGC AACTACCTGG ACGACACGGA GATCGAGGTG CAGCGCCACG ATGTGGTGGG CTACGAGGCA TCCATGTCGC ACCGGCACTA TGTCGGGCCG GTGGCGCTCG ATGGCGGGAT CGCATGGCGT GAAACGCTGC CGGATCACTC CAACGTGCCG GGCGTGGTGG TGGGCGACAC CACCTATGGC GGCCGCTCGC AGATCGAAAC CGCGAATGCG AGCCTGTACT GGCCCTTCAA GGTCGCAAGC CAGGTCTTCG AGTTCAACAG CAACTGGGCC ATTCAGCATG CCCGCACGCG CGTGCTGCCG AGCGATTACT TCACGATCGG CAACCGCTAC ACCGTGCGCG GCTTCGACGG CCAGTTGACG CTGGCGGCCG AGGATGGCTG GTACTGGCGC AACGAACTGG CGTGGCGTGT GGCCGGACAG GCCATCTACG GTGGCATCGA TGTGGGCAAG GTGCATGGGC CGAGCGCCGA ATCCTTGCTC GGCGAGCAGT TGGTCGGTGC CGTGATCGGT GTGCGCGGGC GGGTGCCGTC GGGGCGCTAT GCGACGGTCA ACTACGATCT GTCGTTCGGC TGGCCGCTGT CCAAGCCGGC GGGCTTCCGC TCCGAGCGGC CGGCGGTGAT GGCGCAGGTG GGTGTCGAAT TTTAG
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Protein sequence | MSSAVLRAAV LCAGTASSFA LAQVAPAPVS GPGPEVQRLQ EQQADQARDR ANARPDVFTP PAPTQAISLS ALPKETPCFP IQGIVLEDNV FNWLPYLLQP VNGQCVGKQG LEAIELQVNN ALIEHGYVTS RVLIPQQNLA EGALRLKVLP GRIGAVRNAS DDNIGWARMA LLAGPGDLLN QRDLDQALET VRRLPGQSEA SFDIVPGAQV GESDIVLKPG TEKRWHATLS ADNTGMKNTG KYQMSGSLVI DSPLHLYDQL AISASSNTDR GAATQGTRSY SINWSVPVGY ATVFVGANRS RYRQTVAGFE DPIVYSGQSS EVNLGISGVL HRDATSRTGA QFKVFRKINR NYLDDTEIEV QRHDVVGYEA SMSHRHYVGP VALDGGIAWR ETLPDHSNVP GVVVGDTTYG GRSQIETANA SLYWPFKVAS QVFEFNSNWA IQHARTRVLP SDYFTIGNRY TVRGFDGQLT LAAEDGWYWR NELAWRVAGQ AIYGGIDVGK VHGPSAESLL GEQLVGAVIG VRGRVPSGRY ATVNYDLSFG WPLSKPAGFR SERPAVMAQV GVEF
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