Gene RSc1757 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1757 
Symbol 
ID1220595 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1880890 
End bp1882419 
Gene Length1530 bp 
Protein Length509 aa 
Translation table11 
GC content68% 
IMG OID637238149 
Productlysine-specific permease transmembrane protein 
Protein accessionNP_519878 
Protein GI17546476 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0833] Amino acid transporters 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.425351 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.34059 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATACAC CGATCACCCC CACCGGCCTC GAGGGCCAGT CCGAACTGCG CCGGCGCCTG 
CGCGCGCGCC ACCTGACGAT GATCGCCCTC GGCGGCGCCA TCGGCACCGG GCTGTTCGTC
GCCTCCGGCG CCTCCATCGC GCAGGCCGGC CCGGGCGGCG CCCTGTTCAC CTACACGCTG
ATCGGCGTGA TGGTCTACTG CCTGATGACG AGCCTCGGCG AGCTGGCGGT GCACCTGCCG
GTGTCGGGCT CCTTCGTCAC GTACAGCCGG CTGTACGTGG AGGAAGGGTT CGGCTTTGCG
CTGGGGTGGA ATTACTGGTT TGCGCTGGCG GTGTCCGTGG CGGTGGAGCT GGCGGCGGCG
CAGCTGGTGA TGAAGTACTG GTTCCCCGGC GTCTCGGGCA TGGTCTGGAG CGCCGCCTTC
CTGCTGCTGA TGTTCGTGCT CAACGCGTTC TCGGTGCGCG GCTTCGGTGA GGCGGAATAC
TGGTTCTCGA TGATCAAGGT GGTGACCATC GTCGTGTTCC TGCTGATCGG GCTGGCGATG
ATCTTCGGCA TCATGAAAGG CGGGCCGCAG TCGGGCTGGC ACAACTTCAC GGTGGGCGAC
GCGCCGTTCG TGGGCGGACT GCCTGCGATG ATCGGCGTGG CGATGATCGC CGGGTTCTCG
TTCCAGGGCG TCGAGACCAT CGGCGTGGCC GCCGGCGAGG CGGAGAACCC CGCCCGCACC
ATTCCGCGCG GCATCCGCCA GACCTTCTGG CGCATCCTGC TGTTCTACGT GCTGGCGATC
CTGATCATCG CCGTGCTGCT GCCGTACACC GATCCGAACC TGCTGCGCAA CGAGGCCACC
GACATCGGCG TAAGCCCGTT CGCGCTGGTG TTCCAGCATG CCGGCCTCGC CTTCGCCGCC
GGCATGATGA ACGCGGTGGT GCTGACCGCG CTGCTGTCGT CCGGCACCTC GAGCCTGTAT
GTCTCGACGC GCATCCTCTA CGACCTCGCG CTTGAAGGCC AGGCGCCGCG GTGGTTCGCC
AGGGTCTCGG GCAACGGCGT GCCGCACCGG GCGCTGCTGG CCACCTCGGC GGTGGGCGCG
CTGTGCTTCT TCAGCTCGCT CTTCGGCGAC CAGGTCGTGT ACCTGTGGCT GCTCAATACC
TCGGCGGTGA CGTGCTTCAT CGCCTGGTTC GGCATCGCGC TGGCGCACTA CCGCTTCCGC
AAGGGCTTTC TGCATCAGGG CCACACGGTC GATCAGCTCG AATACCGCTC GCCCTTCTTC
CCGTTCGGGC CGATCCTGGT GGCCGCCCTG TGCGTGATCA TCATCCTCGG GCAGAACACC
AAGGCGCTGT TCGCGCCGAT CGACAACTTC GGCGCCTTCG TCGCCACGTA TTGCGGGGTG
TTTCTGTTCG TGGCGATCTG GCTGGGGTAC CGGTGGCGCT ACAAGACGCG GTTTGTGCGG
TACGAGCAGA TGCAGTTCAG CCCGCGGCAC ATCCGGGCGG CGCAGGCCGG GGATGGCGGG
GCCGCGCTGC CGGGCGTGGC CGCGGATTAG
 
Protein sequence
MHTPITPTGL EGQSELRRRL RARHLTMIAL GGAIGTGLFV ASGASIAQAG PGGALFTYTL 
IGVMVYCLMT SLGELAVHLP VSGSFVTYSR LYVEEGFGFA LGWNYWFALA VSVAVELAAA
QLVMKYWFPG VSGMVWSAAF LLLMFVLNAF SVRGFGEAEY WFSMIKVVTI VVFLLIGLAM
IFGIMKGGPQ SGWHNFTVGD APFVGGLPAM IGVAMIAGFS FQGVETIGVA AGEAENPART
IPRGIRQTFW RILLFYVLAI LIIAVLLPYT DPNLLRNEAT DIGVSPFALV FQHAGLAFAA
GMMNAVVLTA LLSSGTSSLY VSTRILYDLA LEGQAPRWFA RVSGNGVPHR ALLATSAVGA
LCFFSSLFGD QVVYLWLLNT SAVTCFIAWF GIALAHYRFR KGFLHQGHTV DQLEYRSPFF
PFGPILVAAL CVIIILGQNT KALFAPIDNF GAFVATYCGV FLFVAIWLGY RWRYKTRFVR
YEQMQFSPRH IRAAQAGDGG AALPGVAAD