| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1684 |
|---|
| Symbol | |
|---|
| ID | 1220520 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1802822 |
|---|
| End bp | 1804060 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637238074 |
|---|
| Product | phage phi-C31 GP36-like protein |
|---|
| Protein accession | NP_519805 |
|---|
| Protein GI | 17546403 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
|---|
| TIGRFAM ID | [TIGR01554] phage major capsid protein, HK97 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.885456 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTGG CTGAACTGAA GCAGAAGCGT GCAAAGATCG CTGCCGAAAT GCGCTCGCTG
AACGACAACA TTGGCGAGGT CGCCTGGAAC GATGAACAGC GCTCGCGCTG GGATGCCATG
CGCGCGGATC TCAAGAAGCT CGACGAGCAG ATCGAGCGCG AGGAAGAACT GCGCAGCGCG
GAGCAGCGCT ACGTCGAGAG CAACGCGGAC GACCTGGCTA GGCAGGCGCG GCAGGCTGCG
GCTGCTGCCA CCGGCGGGAC AACGGACGAC GAGCGCCGTG CCGCGGCTTT TGGGCGCTTC
CTGCGCGAAG GCCTCGGCGA GCTGTCCGCC GAAGAGCGCA GGGCGCTGCA GGAACTGCGC
GCGCAGAGTG CCGGCGTGCC GGACAAGGGC GGCTACACCG TGCCCCGCAC CTTCCTGGCC
AAGGTGGTCG AGCAACTGGT GACCTACGGC GGCATGGCCA GCGTCATGCA GAATCTGACT
ACGGACGGCG GCGAGCCGAT CGACTGGCCG GTGGCGCTGG GCGTGGCGGA GGAGGGCGAA
CTCCTCGGCG AAGGCGAGGC GACAGGCGAA GACGACATCG ATTTCGGCAT CGGAACCCTT
GGCGCTCACA AGCTCTCGTC GAAGGTGGTC CGTGTCAGCG AGGAACTGCT CAGCGACTCG
TCCGTCGACA TCGAAGCGTT CCTGGCCGGT CGCATCGCCG CGCGCATCGG CCGTGCGGAA
TCTCGCCTGG TGGTGCAGGG GACGGGCGAC GGCAAGCCGC AGCAGCCGCA GGGGCTGGCC
GCATCCGTGA CTCTCACCAA GAGCACGGCG AATGCCGCGA AGCTGACCTG GCAGGAGGTC
AACACCCTGA TTCACGCCGT GGATCCGGCT TACCGGAATG CGCCCATGTA TCGCCTGGCC
TTCAACGATC AGACGTTGAA GGTGCTTGAG GAGTTGGTCG ACGGCAACGG TCGCCCGCTG
TGGCTGCCGG GCCTGGAATC GTCCGCGCCG CCGACGATTC TCAAGCGGCA ATACGTGATC
GACCAAGCGA TCGATGATAT CGGCGCCGGC AAGAAATTCA TGTATGGCGG CGACTTCAAC
CAGTTCATTC TGCGGCGTGT GCGGTCCATG GCGATCAAGC GACTGGTCGA GCGCTACGCG
GAATACGGCC AGGTCGGCTT CCTGGCCTTC CACCGCTTCG GTTGCGTGCT GCAGGACACG
TCCGCAATTG CGGCGCTGGT CGGCAAGCCG GCTGTGTAA
|
|---|
| Protein sequence | MTLAELKQKR AKIAAEMRSL NDNIGEVAWN DEQRSRWDAM RADLKKLDEQ IEREEELRSA
EQRYVESNAD DLARQARQAA AAATGGTTDD ERRAAAFGRF LREGLGELSA EERRALQELR
AQSAGVPDKG GYTVPRTFLA KVVEQLVTYG GMASVMQNLT TDGGEPIDWP VALGVAEEGE
LLGEGEATGE DDIDFGIGTL GAHKLSSKVV RVSEELLSDS SVDIEAFLAG RIAARIGRAE
SRLVVQGTGD GKPQQPQGLA ASVTLTKSTA NAAKLTWQEV NTLIHAVDPA YRNAPMYRLA
FNDQTLKVLE ELVDGNGRPL WLPGLESSAP PTILKRQYVI DQAIDDIGAG KKFMYGGDFN
QFILRRVRSM AIKRLVERYA EYGQVGFLAF HRFGCVLQDT SAIAALVGKP AV
|
|---|
| |