| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1654 |
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| Symbol | |
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| ID | 1220489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1778487 |
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| End bp | 1781606 |
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| Gene Length | 3120 bp |
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| Protein Length | 1039 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637238043 |
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| Product | transmembrane drug efflux protein |
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| Protein accession | NP_519775 |
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| Protein GI | 17546373 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.556775 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACACT CCCGTTTCAA CCTGTCACGC TGGGCGCTCG AGCATCAGCC GCTGACCCGC
TTCCTGCTGG TGGCGCTGCT GCTCGGCGGC ATCTTCGCCT ATACCCAACT CGGTCAGGAC
GAAGACCCGC CCTTCACCTT CCGCGCAATG GTGGTGCAGG CGTTCTGGCC TGGCGCGACC
GCCGAGCAGA TGTCGCGCCA GGTGACCGAC AAGATCGAAA AGGCGCTGCA GGAAGTGCCA
TACGCCTGGA AGATCCGCAG CTATTCCAAG CCCGGCGAGA CGCTCGTCAC CTTCCAGCTG
GCCGACACCT CGCCGACCAA GGATACGCAG CAGCTCTGGT ACACGGTGCG CAAGAAGGTG
GGCGATATCG CGTCTTCGCT GCCGACCGGC GTGCGTGGAC CGTACTTCAA CGATGATTTC
GGCGATGTGT ACGGCTCCAT CTATGCGCTG TCCGCCGACG GCTTCACCTA CCGCCAGCTC
AACGACTACG CCGATGCGAT CCGCCAGCAA CTGCTGCGCG TGCCCAACGT CGCCAAGGTC
ACCCTGCTCG GCGACCAGGA CGAGAAGATC TACATCGAGT TCCAGCAGGC CAAGTTCGCG
CAGATGGGGC TGGACATCAA CAGCATTGCC AACCAGATCG CGCAGCAGAA CAACATCGGC
CCCAGCGGCG TGCTGGTCAC GCCGACGGAC AACGTGCAGA TCCGCCTGTC CGGCCAGTTC
TCGGACATCC GCGACCTGGA GAACCTGACC CTGCGCGGCC CCGGCGGCAC CAGCAATATC
CGCCTGGGCG ACATCGCCAC CATCCGGCAC GGCTACATCG ATCCGCCGCG CGCCAAGATG
CGCTTCAACG GCAAGGAGGT GATCGGGCTG GGCATCTCGA TGGCCAAGGG CGGCGACATC
ATCCAGCTCG GCAAGGACCT GCGCGCCACG GTGGAGCGCA TCCGCGCGAA GCTGCCGGTC
GGCATCGAGA TGCAGCAGGT GCAGGATCAG CCGCAGTCGG TGCAGCACTC CGTGGGCGAG
TTCGTCCACG TGCTGATCGA GGCGGTGGTG ATCGTGCTGG CGGTGAGTTT CCTGTCGCTG
GGCCTGCACA CCAAACCGCG CCTGCGCATC GATGTGTGGC CGGGGCTGGT GGTGGGCCTG
ACGATCCCGC TGGTGCTGGC GGTGACGTTC CTGTTCATGA ACATCTTCGA CATCGGGCTG
CACAAGATCT CGCTGGGCGC GCTGATCATC GCGCTGGGCC TGCTGGTGGA CGACGCGATC
ATCGCGGTCG AGATGATGGT GCGCAAGCTG GAGGAGGGCT TCTCCAAGAT GGAGGCCGCC
ACCTTCGCCT ACACCTCCAC CGCCATGCCG ATGCTGACCG GCACGCTGAT CACCGCCACG
GGCTTCCTGC CGGTGGGCCT GGCGCGCTCG ACGGTGGGCG AGTACACCTT CGGCATCTTC
GCGGTGACGG CGCTGGCGCT GGTGTTGTCG TGGGTCGCGG CGGTGGTGTT CGTGCCGTAT
CTGGGCTACC TGCTGCTGCA TACGAAATCG CACGTGGGCG ACGGCGGCCA TCACGAGCTG
TTCGACACGC CGTTCTACAA TCGCTTCCGC GGCTGGGTGA ACTGGTGCGT GGAATACCGC
AAGACGGTGA TCGTCATCAC GCTGGCGGCC TTCGTGCTGG GCGTGTTCGG CTTCAAGTAT
GTCGAGAAGC AGTTCTTCCC CGACTCCAGC CGGCCCGAGC TGATGGTGGA GCTGTGGCTG
CCGGAAGGCG CCAGCTTCGG CCAGACCGAG GCCGAGGCCA AGCGCTTCGA GGCGCTGATC
CGCCAGCAGA AAAGCGTGGA GAGCGTGGCG TTCTTCATCG GCTCCGGTGC GCCGCGCTTC
TACCTGCCGC TGGACCAGAT CCTGCCGCAG ACCAACGTGG CGCAGGCCAT CGTGATGCCG
ACTTCGCTGG AGACGCGCGA GGACGTGCGG CAGGAGATCA TCGGCCTGCT GAAGTCGCAG
TTCCCGCAGC TGCGCGGCCG CGTCAAGCTG CTGCCGAACG GGCCGCCGGT GCCGTATCCG
GTGCAGTTCC GGGTGATGGG GCCGGACATC GGCGGCGTGC GCAAGATCGC CGACCAGGTC
AAGGCCATCA TGCAGGCCAA TCCCAACACC GTGGGCGTGA ACGACAACTG GAACGAGAAC
GTCAAGCTGC TGCGCCTGGA TATCGATCAG GACAAGGCGC GCGCGCTCGG CGTGACCACC
GGTTCGATCG CCCAGGTGAC GCAGACCGTG ATGTCCGGCG CGCCCATCGC CCAGTACCGC
GACGGCGACA AGCTGCTCGA CATCGTGATG CGCCCGCAGG AGCGCGAGCG CAACACGCTC
GACGCCCTGC AGAACGTGCA GGTGCCGACC GCCAGCGGCC GGGTGGTGCC GCTCACGCAG
GTTGCGCGCG TGGGCTTTGC GTGGGAACCG GGCGTGATCT GGCGCGAGAA CCGCGACTAC
GGCATCACCG TGCAGTCCGA CGTGGTGGAC GGCGTGCAGG GGCCGACCGT GACGGCGCAG
ATCAACCCGC TGCTCGACAA GATCCGCGCC GACCTGCCGC CGGACTACCA GATCAAGATC
GCCGGGGCGG AGGAGGAGAG CGCCAACGCG GGCGCCTCCA TCGTCGCGCA GATGCCGCTG
TGCATCTTCA TCATCTTCAC GCTGCTGATG CTCCAGCTGC ACAGCTTCTC GCGTTCGGTG
ATGGTGTTCC TGACCGGCCC GCTGGGGCTG ATCGGCGCGG CCGCGACGCT GCTGCTGCTG
CGTGCGCCGA TGGGCTTCGT GGCGCAGCTG GGCATCACCG CGCTGATCGG CATGATCATC
CGCAACTCGG TGATCCTGGT CGACCAGATC GAGCAGGATG TGGCGACCGG CGTGCCCACC
TGGACCGCCA TCGTCGAGGC GGCGGTGCGG CGCTTCCGTC CCATCATCCT GACGGCGGCC
GCGGCGGTGC TGGCGATGAT CCCGCTGTCG CGCAGCGTGT TCTGGGGGCC GATGGCGGCG
GCCATCATGG GCGGCCTGAT CGTCGCCACG GTGCTGACGC TGCTGTTCCT GCCGGCGCTG
TATGCCGCGT GGTTCCGCGT CAAGCGCCCG GAAGCCGAGG CGGCCGCGCC GACCGCCTGA
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| Protein sequence | MEHSRFNLSR WALEHQPLTR FLLVALLLGG IFAYTQLGQD EDPPFTFRAM VVQAFWPGAT
AEQMSRQVTD KIEKALQEVP YAWKIRSYSK PGETLVTFQL ADTSPTKDTQ QLWYTVRKKV
GDIASSLPTG VRGPYFNDDF GDVYGSIYAL SADGFTYRQL NDYADAIRQQ LLRVPNVAKV
TLLGDQDEKI YIEFQQAKFA QMGLDINSIA NQIAQQNNIG PSGVLVTPTD NVQIRLSGQF
SDIRDLENLT LRGPGGTSNI RLGDIATIRH GYIDPPRAKM RFNGKEVIGL GISMAKGGDI
IQLGKDLRAT VERIRAKLPV GIEMQQVQDQ PQSVQHSVGE FVHVLIEAVV IVLAVSFLSL
GLHTKPRLRI DVWPGLVVGL TIPLVLAVTF LFMNIFDIGL HKISLGALII ALGLLVDDAI
IAVEMMVRKL EEGFSKMEAA TFAYTSTAMP MLTGTLITAT GFLPVGLARS TVGEYTFGIF
AVTALALVLS WVAAVVFVPY LGYLLLHTKS HVGDGGHHEL FDTPFYNRFR GWVNWCVEYR
KTVIVITLAA FVLGVFGFKY VEKQFFPDSS RPELMVELWL PEGASFGQTE AEAKRFEALI
RQQKSVESVA FFIGSGAPRF YLPLDQILPQ TNVAQAIVMP TSLETREDVR QEIIGLLKSQ
FPQLRGRVKL LPNGPPVPYP VQFRVMGPDI GGVRKIADQV KAIMQANPNT VGVNDNWNEN
VKLLRLDIDQ DKARALGVTT GSIAQVTQTV MSGAPIAQYR DGDKLLDIVM RPQERERNTL
DALQNVQVPT ASGRVVPLTQ VARVGFAWEP GVIWRENRDY GITVQSDVVD GVQGPTVTAQ
INPLLDKIRA DLPPDYQIKI AGAEEESANA GASIVAQMPL CIFIIFTLLM LQLHSFSRSV
MVFLTGPLGL IGAAATLLLL RAPMGFVAQL GITALIGMII RNSVILVDQI EQDVATGVPT
WTAIVEAAVR RFRPIILTAA AAVLAMIPLS RSVFWGPMAA AIMGGLIVAT VLTLLFLPAL
YAAWFRVKRP EAEAAAPTA
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