| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1643 |
|---|
| Symbol | ispD |
|---|
| ID | 1220478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1767907 |
|---|
| End bp | 1768668 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637238032 |
|---|
| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| Protein accession | NP_519764 |
|---|
| Protein GI | 17546362 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.28963 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGTTT CCTCCCGTCC CGGCCGACGC CGGTTTGCGC TGATCCCGTC CGCCGGCACC
GGCACGCGTG CCGGCGGCGA TCTGCCCAAG CAGTACCAGC CCCTCGCTGG CCGCCCGATG
CTGTGGCATA CCGTGCAGGC CTTCCTGGCC AGCGCGGCGA TCGACCGGGT GGTGGTGGTG
ACTTCGCCGG GCGCGCCGGC GCTGGCGGCG CGCTTTCCCG GCCTGGGTTT CGACGCGGCC
CGGCTGGTGG AGGTCGATTG CGGCGGCGAT TCGCGCCATG CCTCGGTCAC CAACGGCCTG
GCGGCGCTGC GTGGCCTCGG CGCGCACGAA GACGACTGGG TGCTCGTGCA CGATGCCGCC
CGCCCGGGCC TCACGCCTGC CCTGATCGCG CGGCTGGTCG GCGCCGTCGA GGCCGACGGC
GGGCAGGCGG TCGGCGGCAT CCTGGCGCTG CCGGTAGCCG ATACGCTCAA GCGCGCCGAT
GCCGGGCAGC ACATCGCCGA GACCGTGCCG CGCGGCGGCC TGTGGCAGGC GCAGACGCCG
CAGATGTTTC CGCTCGGCCT GCTGCAGCGC GCCCTGTCGG AGGCCCTGAC CGCGCAGCGC
ATCGTCACCG ATGAGGCCAG CGCCATCGAG GCCGCCGGTC ACCGGCCCTT GCTGGTGGCC
GGCGCGCTGC GCAACTTCAA GGTGACTTAT CCCGACGATT TCGCGCTCGC CGAGGCCATC
CTCGCGGGCG CCGCACCGAC CCAGGAGGAT TCGCAAGCAT GA
|
|---|
| Protein sequence | MSVSSRPGRR RFALIPSAGT GTRAGGDLPK QYQPLAGRPM LWHTVQAFLA SAAIDRVVVV
TSPGAPALAA RFPGLGFDAA RLVEVDCGGD SRHASVTNGL AALRGLGAHE DDWVLVHDAA
RPGLTPALIA RLVGAVEADG GQAVGGILAL PVADTLKRAD AGQHIAETVP RGGLWQAQTP
QMFPLGLLQR ALSEALTAQR IVTDEASAIE AAGHRPLLVA GALRNFKVTY PDDFALAEAI
LAGAAPTQED SQA
|
|---|
| |