Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1636 |
Symbol | rimO |
ID | 1220471 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1757469 |
End bp | 1758830 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637238025 |
Product | ribosomal protein S12 methylthiotransferase |
Protein accession | NP_519757 |
Protein GI | 17546355 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0621] 2-methylthioadenine synthetase |
TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family [TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.413832 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGACG TCAGTACCCA GAGCCCCAAG GTGGGGTTCG TCAGCCTCGG TTGTCCCAAA GCCCTCGTGG ATTCCGAGCA GATCATCACC CAGCTGCGCG CCGAGGGGTA CGAGATTTCC GGCACCTATG GCGGGGCCGA CCTGGTGGTC GTGAACACCT GCGGTTTCAT CGATGAGGCC GTGCAGGAAA GCCTGGACGC CATCGGCGAG GCGCTGGCCG AGAACGGCAA GGTGATCGTC ACCGGCTGCC TGGGCGCGAA GAAGGACGCC GCCGGCCAGG ACATCATCAC CAGCGTGCAT CCCAAGGTGC TGGCCGTGAC CGGTCCGCAT GCGCTGGGCG AGGTGATGGA GGCGGTACAT ACGCACCTGC CCAAGCCGCA CGATCCGTTC ATCGACCTGG TGCCGCCGCA GGGCATCAAG CTCACGCCGA AGCACTACGC GTATCTGAAG ATTTCCGAAG GCTGCAATCA CCGCTGCAGC TTCTGCATCA TCCCGTCGAT GCGCGGCGAC CTGGTCTCGC GCCCGGTGGC CGAAGTGATG CTGGAGGCGG AGAACCTGCT GAAGGCCGGC GTGAAGGAGC TGCTGGTAAT CTCGCAGGAC ACCAGCGCCT ACGGCGTCGA CGTCAAGTTC CGTACCGGCT TCTGGAACGG CCGGCCGCTC AAGACGCGCA TGACCGAACT GGTCGGCGCG CTGGGCGAAC TGGCGGCCCA GTATGGCGCC TGGGTGCGCC TGCATTACGT CTACCCGTAT CCGAGCGTGG ACGAGGTGAT GCCGCTGATG GCCGAGGGCA AGGTGCTGCC GTATCTCGAC GTGCCGCTGC AGCATGCCCA TCCGGAAGTG CTCAAGCGCA TGAAGCGCCC GGCCAACGCG GAGAAGACGC TGGACCGCAT CCGCGCCTGG CGCGAGGTCT GCCCGGAGCT GACCATCCGC AGCACCTTCA TCGCCGGGTT CCCGGGCGAG ACGGAGGAAG AGTTCCAGAC GCTGCTCGAC TTCATCGCCG AGGCCGAGCT CGATCGTGTC GGTTGCTTCG CCTACTCCCC GGTGGAGGGC GCGACCGCCA ACGATCTGCC GGGCGCGCTG CCCGACGAGG TGCGCGAGGA GCGCCGCGCG CGCTTCATGG AAGTGGCCGA GCGCGTGTCG GCCCGCCGCC TGCAGCGCAA AGTGGGCAAG ACGCTGCGCG TGCTGGTGGA TGAGGTCAAC CAGGATGGCG GCATCGGCCG CTCGTCGGCG GATGCGCCGG AGATCGACGG CCTGGTCTAC ATTGCGCCGC CGTCCAAGCC GTACAAGCGC TACAAGGCGG GCGATTTCGT GTCGGTGAAG ATCACCGGCG CCGATGGCCA CGACCTGTGG GGCGAGGTCT GA
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Protein sequence | MSDVSTQSPK VGFVSLGCPK ALVDSEQIIT QLRAEGYEIS GTYGGADLVV VNTCGFIDEA VQESLDAIGE ALAENGKVIV TGCLGAKKDA AGQDIITSVH PKVLAVTGPH ALGEVMEAVH THLPKPHDPF IDLVPPQGIK LTPKHYAYLK ISEGCNHRCS FCIIPSMRGD LVSRPVAEVM LEAENLLKAG VKELLVISQD TSAYGVDVKF RTGFWNGRPL KTRMTELVGA LGELAAQYGA WVRLHYVYPY PSVDEVMPLM AEGKVLPYLD VPLQHAHPEV LKRMKRPANA EKTLDRIRAW REVCPELTIR STFIAGFPGE TEEEFQTLLD FIAEAELDRV GCFAYSPVEG ATANDLPGAL PDEVREERRA RFMEVAERVS ARRLQRKVGK TLRVLVDEVN QDGGIGRSSA DAPEIDGLVY IAPPSKPYKR YKAGDFVSVK ITGADGHDLW GEV
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