Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1627 |
Symbol | |
ID | 1220462 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 1748034 |
End bp | 1748903 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637238016 |
Product | hypothetical protein |
Protein accession | NP_519748 |
Protein GI | 17546346 |
COG category | [R] General function prediction only |
COG ID | [COG4105] DNA uptake lipoprotein |
TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTTGATG CGATTTTTCA TTCAGACAAG GTGCCCATGT CGGTCACGAG CATGAAGCTG GCGCGCATTC GCGCGCGAAT CGGAGCGGTA TTGGCGGCGG GCGTTGCATG CCTCGCGATC TCGGCCTGCG GCATCATGCC GGAACAACAG GACGAGACCG CAGGCTGGTC GGCCAACAAA TTATATTCGG AAGCGAAGGA CGCGCTCGAC GGCGGCGACT ACAGCAAGGC CGTCAAGTAC TACGAAAAGC TCGAGAGCCG CTATCCGTTC GGGCCCTTTG CCCAGCAGGC GCAGATCGAA ACCGCCTACG CCAATTACAA GGACGGCGAA ACCGCCGCCG CGCTGGCTGC GGTCGATCGC TTCATCCAGC TGCACCCGAA TCACCCCAGC GTCGATTACG CCTACTACCT CAAGGGCCTG ATCAACTTCA ACGACAACCT GGGCTGGCTG GGCCGCTTCT CCAACCAGGA CCTGAGCGAG CGCGATCCGA AGGCGGCCCG CGCCGCCTAC GATGCGTTCA AGACGCTGAT CACGCGTTTC CCGAACAGCA AGTACGCGCC GGACGCCGCG CAGCGCATGC AGTACATCGT CAACGCGATG GCCGAGCATG AAGTGCAGGC CGCCCGCTAC TACTACCGCC GCGGCGCCTA CCTGGCCGCC ACCAACCGCG CGCAGGAAGC CATCAAGGAT TACGATCGCG CGCCGGCCGT GGAAGAAGGG CTGTACATCA TGATGAAGTC CTACGAAGCG CTTGGCATGA AAGACCTGCG CGACGACACC GAGCGCATCA TCAAGCAGAA CTATCCGAAC AGCGATTTCC TGCTGTACGG ACAGCGCAAG AAGGCCAAGC CGTGGTACCA GTGGTGGTAA
|
Protein sequence | MLDAIFHSDK VPMSVTSMKL ARIRARIGAV LAAGVACLAI SACGIMPEQQ DETAGWSANK LYSEAKDALD GGDYSKAVKY YEKLESRYPF GPFAQQAQIE TAYANYKDGE TAAALAAVDR FIQLHPNHPS VDYAYYLKGL INFNDNLGWL GRFSNQDLSE RDPKAARAAY DAFKTLITRF PNSKYAPDAA QRMQYIVNAM AEHEVQAARY YYRRGAYLAA TNRAQEAIKD YDRAPAVEEG LYIMMKSYEA LGMKDLRDDT ERIIKQNYPN SDFLLYGQRK KAKPWYQWW
|
| |