Gene RSc1627 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1627 
Symbol 
ID1220462 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1748034 
End bp1748903 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content61% 
IMG OID637238016 
Producthypothetical protein 
Protein accessionNP_519748 
Protein GI17546346 
COG category[R] General function prediction only 
COG ID[COG4105] DNA uptake lipoprotein 
TIGRFAM ID[TIGR03302] outer membrane assembly lipoprotein YfiO 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTGATG CGATTTTTCA TTCAGACAAG GTGCCCATGT CGGTCACGAG CATGAAGCTG 
GCGCGCATTC GCGCGCGAAT CGGAGCGGTA TTGGCGGCGG GCGTTGCATG CCTCGCGATC
TCGGCCTGCG GCATCATGCC GGAACAACAG GACGAGACCG CAGGCTGGTC GGCCAACAAA
TTATATTCGG AAGCGAAGGA CGCGCTCGAC GGCGGCGACT ACAGCAAGGC CGTCAAGTAC
TACGAAAAGC TCGAGAGCCG CTATCCGTTC GGGCCCTTTG CCCAGCAGGC GCAGATCGAA
ACCGCCTACG CCAATTACAA GGACGGCGAA ACCGCCGCCG CGCTGGCTGC GGTCGATCGC
TTCATCCAGC TGCACCCGAA TCACCCCAGC GTCGATTACG CCTACTACCT CAAGGGCCTG
ATCAACTTCA ACGACAACCT GGGCTGGCTG GGCCGCTTCT CCAACCAGGA CCTGAGCGAG
CGCGATCCGA AGGCGGCCCG CGCCGCCTAC GATGCGTTCA AGACGCTGAT CACGCGTTTC
CCGAACAGCA AGTACGCGCC GGACGCCGCG CAGCGCATGC AGTACATCGT CAACGCGATG
GCCGAGCATG AAGTGCAGGC CGCCCGCTAC TACTACCGCC GCGGCGCCTA CCTGGCCGCC
ACCAACCGCG CGCAGGAAGC CATCAAGGAT TACGATCGCG CGCCGGCCGT GGAAGAAGGG
CTGTACATCA TGATGAAGTC CTACGAAGCG CTTGGCATGA AAGACCTGCG CGACGACACC
GAGCGCATCA TCAAGCAGAA CTATCCGAAC AGCGATTTCC TGCTGTACGG ACAGCGCAAG
AAGGCCAAGC CGTGGTACCA GTGGTGGTAA
 
Protein sequence
MLDAIFHSDK VPMSVTSMKL ARIRARIGAV LAAGVACLAI SACGIMPEQQ DETAGWSANK 
LYSEAKDALD GGDYSKAVKY YEKLESRYPF GPFAQQAQIE TAYANYKDGE TAAALAAVDR
FIQLHPNHPS VDYAYYLKGL INFNDNLGWL GRFSNQDLSE RDPKAARAAY DAFKTLITRF
PNSKYAPDAA QRMQYIVNAM AEHEVQAARY YYRRGAYLAA TNRAQEAIKD YDRAPAVEEG
LYIMMKSYEA LGMKDLRDDT ERIIKQNYPN SDFLLYGQRK KAKPWYQWW