| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1598 |
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| Symbol | |
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| ID | 1220431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 1714420 |
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| End bp | 1716993 |
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| Gene Length | 2574 bp |
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| Protein Length | 857 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637237985 |
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| Product | two-component transmembrane sensor histidine kinase transcription regulator protein |
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| Protein accession | NP_519719 |
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| Protein GI | 17546317 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.701828 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.909939 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCATCG ACCCTCGTCC GCAGAATTCC GGCGTTCGCC CGCCCATCAT GCTCTCCCCC
TCCCACGCCA CGCCGGAGCC GGCCGACCCC GCGACGCAGC CGCCGGCCGC CGCGATGCCC
GTTCCCGTAC CGGCGCCCGA ACTGCCGCCG GAAGACGGCG TGCGCCCGAA CGTGCCGCGC
GGGCTGTGGA TCATGCGCCT GGGCCGGCTA TGGACCACCA ACTGGTTCAT GTTCATTCCG
CTGGTGGCCA TCGTGCTGTT CGCCGGCGCG ATGATCTTCA TCCTCTACCA GCTGCATGCC
ACCGAGGTGC AGCAACAGCG CGACGCTCTG TACCGCGACG CCGCCTGGGC CGAGCAGAAG
GTGCGGCTGT CCCTGCAGAG CAACCAGGAC CAGGTGGCGG CGCTGGCGCG CGACATCGGC
GCCGCGCAGC TGGACCCGAG CGCCTATCGC GATGCCGCGC GGCAACTGCT GCGCGAGAAC
CCCGAGGTGG TCTTCATCAA CTGGCTGGAT GCCACGCGCC GGCCGCGCTG GGCCTTTCCC
GCCAATTCGG AATTCGCGCA GCGCGTGCGC GAGACGCGCG ACCATCCGCT CGAGGCCGAG
ATCCAGTCCG CCTATGATGC CGCGCGCGAG ACCCAGCGCG CGGTCTACTC CCGCCCCATC
CAGAACGAGC GCGGCGAGAG CTTCATGCTG ATGGAAGTGC CCATCGTCCG TGACAACGAG
TTCCTGGGCA CGGTCGGCGC GATGTATTCC GTGACCGGCA TCCTCACACA GCTGCTGCCG
GGCGAGCTGA CCGACCGCTA CCGCTTCTCG CTGGTCGACA AGGACAATGT GGTGCGCGCC
AGCACGTCGC TGCGGCCGGT GCCCAAGGCG GCCGCGTCGT ACGAGGTGCT GCTGGACCCG
CCGGGGCATT CGCTGTCGCT GCGGGCAGAG GCGTATCCGG CGCTGTCCAA CCTGCCCAAC
AACATGCTGA TGTGGCTGGT GGCGGGGCTG TCATGCTTCG TGATCTGGAG CCTGTGGAGC
GTGTGGCGCC ATACCAGCCG GCGCTCCGAG GCCCAGCGGG CGCTGCTGGC CGAGACCTCC
TTCCGGCGCG CCATGGAGAA CTCCATGGTG ATCGGCCTGC GTTCGCTCGA CCTCAACGGC
CGCATCACCT ATGTCAACCC GGCCTTCTGC CGCATGATCG GCTGGACCGA GCAGGAGCTG
GTCGGCCGCA TGCCGCCCTT CCCGTACTGG CCGGCCAACG AGATCGGCGA GATGCAGAAG
TACATCGAGT TGACGCTGCG CGGCAAGGCG CCGGCCAACG GCATGGAGCT GCGCATGGTG
CGCCGCGATG GCACCAGCTT CTATGCGCGG ATGTACGTCT CGCCGCTGAT CGATGCGCGC
GGCCGGCACA CGGGCTGGAT GAGCTCCATC ACCGACATCA CCGAGCCCAA GCGCGCGCGC
GAAGACCTGG CCGCCGCGCA CGACCGCTTC ACCACGGTGC TCGAGAGCCT GGATGCCGCC
GTCTCGGTGC TATCGACCGA CAAGGCGGAG CTGCTGTTCG CCAACCGCTA TTACCGGCAG
CTGTTCGGCT GGGAGGCCTC CGGCCACCTT CAGTTGTCGG GCACCGATGT CAACACGGAG
GATGTCTCCA GCGATGCGCT CGACCTGGTC GACGGCTTCG CCGGCCTGCC CGCCTCCGAG
CTCACGCCGC ACGCCGCCGA CGCGCGCGAG GTCTACCTGC CGTCGATGCA GAAATGGTTC
GAGGTGCGCC GCCGCTATAT CCAGTGGGTG GACGGCCACC TGGCGCAGAT GCAGATCGCC
ACCGACATCA CCGTGCGCAA GGCGGCCGAA GAGATGACAC GCCAGCATGA AGAGCGCCTG
CAGTTCACCA GCCGCCTGAC CACCATGGGC GAGATGGCGT CGTCGCTCGC GCACGAGCTG
AACCAGCCGC TGGCGGCCAT CAACAACTAC TGCATGGGTG CGGTCGGGCG CCTGAAGAGC
GGGCGCAGCA CGCCGGAGGA GCTGATCCCG GTGCTGGAGA AGACCTCCGC CCAGGCGGTG
CGCGCCGGCA CGATCATCCA GCGCATCCGC GGCTTCGTGA AGCGCAGCCA GCCGCAGCGC
CGCGAAGCCG ACCTGCGCGA GATGGTGGCC GACGCGGTGG GCCTCGCCGA GCTGGAGGCC
ATCCGGCGCG GCGTGACCAT CCTGACGCGG CTGCCGGCCG GCCTGCCGCA CCTGTATGTC
GACCCGGTGC TGATCGAGCA GGTGCTGGTC AACCTGCTCA AGAACGCCGT CGAAGCCATG
GCGGCCCATC CGCGCCTGCG CGCCGCCGCC GTGCTGCGCC TGCACGCCAG CCTGGTCAGC
GACCCGGAGA ACTCCGTGCT GATCGAGGTC ATCGACCAGG GCCCCGGCGT GGACGACAGC
ACCAAGGAGC GCCTGTTCGA GCCGTTCTTC AGCACCAAGT CCGACGGCAT GGGCATGGGA
CTCAACATCT GCCGCTCCAT CATAGAATCC CACCTCGGGC GGTTGTGGGT GGAAAACAAT
CCCGACGGCA TCGGCTGTAC GTTTAAAATC ACCCTTCCGC TGCATCCGGT CTAA
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| Protein sequence | MSIDPRPQNS GVRPPIMLSP SHATPEPADP ATQPPAAAMP VPVPAPELPP EDGVRPNVPR
GLWIMRLGRL WTTNWFMFIP LVAIVLFAGA MIFILYQLHA TEVQQQRDAL YRDAAWAEQK
VRLSLQSNQD QVAALARDIG AAQLDPSAYR DAARQLLREN PEVVFINWLD ATRRPRWAFP
ANSEFAQRVR ETRDHPLEAE IQSAYDAARE TQRAVYSRPI QNERGESFML MEVPIVRDNE
FLGTVGAMYS VTGILTQLLP GELTDRYRFS LVDKDNVVRA STSLRPVPKA AASYEVLLDP
PGHSLSLRAE AYPALSNLPN NMLMWLVAGL SCFVIWSLWS VWRHTSRRSE AQRALLAETS
FRRAMENSMV IGLRSLDLNG RITYVNPAFC RMIGWTEQEL VGRMPPFPYW PANEIGEMQK
YIELTLRGKA PANGMELRMV RRDGTSFYAR MYVSPLIDAR GRHTGWMSSI TDITEPKRAR
EDLAAAHDRF TTVLESLDAA VSVLSTDKAE LLFANRYYRQ LFGWEASGHL QLSGTDVNTE
DVSSDALDLV DGFAGLPASE LTPHAADARE VYLPSMQKWF EVRRRYIQWV DGHLAQMQIA
TDITVRKAAE EMTRQHEERL QFTSRLTTMG EMASSLAHEL NQPLAAINNY CMGAVGRLKS
GRSTPEELIP VLEKTSAQAV RAGTIIQRIR GFVKRSQPQR READLREMVA DAVGLAELEA
IRRGVTILTR LPAGLPHLYV DPVLIEQVLV NLLKNAVEAM AAHPRLRAAA VLRLHASLVS
DPENSVLIEV IDQGPGVDDS TKERLFEPFF STKSDGMGMG LNICRSIIES HLGRLWVENN
PDGIGCTFKI TLPLHPV
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