Gene RSc1572 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1572 
Symbol 
ID1220403 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1687608 
End bp1688387 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content69% 
IMG OID637237957 
Product3-hydroxybutyrate dehydrogenase 
Protein accessionNP_519693 
Protein GI17546291 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCAAG GAAAAACCGC CCTGGTGACC GGCTCCACCA GCGGCATCGG CCTGGGCATT 
GCCTGCGCGC TCGCGGCGCA GGGCGCCAAC ATCGTCATGA ACGGCTTCGG CGACCTGGAC
GGGCCCAAGG CCCGGATCGC CGGGGCCGGC AAGGATGCCG TCCGCGTCGG CTACCACGGC
GCCGACATGA GCAAGCCCGC CGAGATCGAG GCGATGTTCG CCTACGCCGA TGCCGAATTC
GGCGGCGTGG ACATTCTCGT CAACAACGCC GGCATCCAGC ACGTGGCCAA CGTGGAAGAC
TTCCCGGCCG AGCGCTGGGA CGCCATCCTC GCCATCAACC TGTCGTCGGC GTTCCACACC
ACGCGGCTCG CGGTGCCGGG CATGAAGCGC AAGAACTGGG GCCGCATCGT CAATATCGCC
TCCGCGCACG GGCTGGTGGC GTCGGCGCAG AAGTCGGCCT ACGTGGCGGC CAAGCACGGC
ATCGTCGGCC TGACCAAGGC GGTGGCACTG GAGACCGCGC AGACCGGCGT TACCGTCAAC
GCGATCTGCC CGGGCTGGGT GCTGACGCCG CTGGTGCAGA AGCAGATCGA CGCGCGTGCC
GAGAAAGAGG GCATTCCCGT CCTGCAGGCC AAGAAGGAAC TGCTGATGGA GAAGCAGCCC
TCCGGCGAAT TCGTCTCGCC CGAGCAGCTC GGCGCGCTGG CGGTGTTCCT GTGCAGCGAG
GCCGCCGAGC AGGTGCGCGG CGTGGCGTGG AGCATGGACG GCGGCTGGGT CGCGCAGTAA
 
Protein sequence
MLQGKTALVT GSTSGIGLGI ACALAAQGAN IVMNGFGDLD GPKARIAGAG KDAVRVGYHG 
ADMSKPAEIE AMFAYADAEF GGVDILVNNA GIQHVANVED FPAERWDAIL AINLSSAFHT
TRLAVPGMKR KNWGRIVNIA SAHGLVASAQ KSAYVAAKHG IVGLTKAVAL ETAQTGVTVN
AICPGWVLTP LVQKQIDARA EKEGIPVLQA KKELLMEKQP SGEFVSPEQL GALAVFLCSE
AAEQVRGVAW SMDGGWVAQ