Gene RSc1554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1554 
Symbol 
ID1220384 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1669739 
End bp1670803 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content60% 
IMG OID637237938 
Productputative integrase/recombinase protein 
Protein accessionNP_519675 
Protein GI17546273 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCACGA TCATCGAGAA GTACACGAAG CGAGGCGAAG TCCGGTTCCA GGCAAAGATT 
CGCCGCACTG GTGTCCCGAT TGCCTCGAAA GTATTCCCTT CCCGGGAAGA AGCAGAGGCT
TGGATACAGG CCACCGAGCC TGAGCTGCAG GCTCGGTCCC GACAGGCTGC TCGCCAACAA
GCCCAGGCGA AGCTGATAGC AAAGTTCAAA GACCGCCCGC GCATCGTTGC CGACTTGCTC
CACCGGCACA TGCAAGAGGA GACTGTCCGC AAAAAGGGAG CGGAGGCTGA GACCCACCAC
ATCAGTAGCA TCCTGCGGTA CCCGCTTGCC CGCATCCATT TGGACAACCT GACACGCAGC
GACATCAAGG AATGGCGAGA CCAAAGGCTG CAGGACGTTG CGCCCAGTAC CGTCAATCGA
GAACTAAACA TCATCAACGC GGCACTCAAG GTGGCCGTTC ACGAATGGGA CGTTGCGATC
TGCCAAAGCG TGCTCACGTC TGTGCGCCGC CCAAGCAATC CGCCGGGGCG TGTACGAAGG
CTGTCCCCCG AGGAGGAAGC CGCACTGAGA CAGGCAGGCG AGGAAACGCG GAATCCCTAC
ATCGTGCCCA TCTTGGATTT GGCCCTAAAC ACGGCCATGC GGCGCGGTGA AATACTCGGG
CTGGAGTGGG AGCGCATCAG CTTCGCTCAC CGCTCTATTC AGCTCATCGA GACGAAGAAT
GGAACGCCCC GAGGTGTGCC TCTTTCGCGG CATGCGATGA AGGTACTGGC TACGCTGAAA
CAGGTGGCGG CCCACGAACT TGGCTACGAG GGCGAGCTGA ACTCTGGTCC GGTGTTTCCT
GGTCTTACCG CCAACGCTTT CAAGCTGGCG TTCAACCGCA TGATGGAGCG CGCAGGGTTG
GAGAACTTCC GGTTCCACGA CCTGAGGCAC GAGGCCACGA GCCGCCTCTT TGAGAAAGGG
CTATCCGTCA TGGAGGTGGC TTCCATTACC GGGCACAAGG ACATCAGGAT GCTTCAGCGC
TACACCCACC TACAGGTCAA GGACTTGGCG GCGAAGCTGG ACTAG
 
Protein sequence
MGTIIEKYTK RGEVRFQAKI RRTGVPIASK VFPSREEAEA WIQATEPELQ ARSRQAARQQ 
AQAKLIAKFK DRPRIVADLL HRHMQEETVR KKGAEAETHH ISSILRYPLA RIHLDNLTRS
DIKEWRDQRL QDVAPSTVNR ELNIINAALK VAVHEWDVAI CQSVLTSVRR PSNPPGRVRR
LSPEEEAALR QAGEETRNPY IVPILDLALN TAMRRGEILG LEWERISFAH RSIQLIETKN
GTPRGVPLSR HAMKVLATLK QVAAHELGYE GELNSGPVFP GLTANAFKLA FNRMMERAGL
ENFRFHDLRH EATSRLFEKG LSVMEVASIT GHKDIRMLQR YTHLQVKDLA AKLD