| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1545 |
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| Symbol | |
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| ID | 1220375 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 1651021 |
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| End bp | 1653351 |
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| Gene Length | 2331 bp |
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| Protein Length | 776 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637237929 |
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| Product | hypothetical protein |
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| Protein accession | NP_519666 |
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| Protein GI | 17546264 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.150564 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATGA AAGCGCTTGC GGGCCGGGTA GCCCGCTTCA TGGGCGTGCC GGCCGACAAC
CCGGAGCTGC TCAAGGCGCA GTACCGCGCC TTCTCGCGCC AGTTGCCGAT GATGTACTTC
ATCCTCATCT CGAGCACCTG GGCGGTCGCC CTCACCTACC GCGCCATCAC CCCGGCCTGG
CTGACGGTCG GGATACCGCT GCTGCTGACG CTGGCCTGCG CGATACGCGT GCTGCACTGG
TGGCAGTCCC GCCGCATCGA CCCGACACCC GAGCTCGCCC TGGGCGCCCT CACGCGCACC
AACCGGCTGG CCAGCGTCAT CGCCGTGTCG TTCACAGCCT GGTCGCTCGC GCTGTTCCAC
TATGGCGACG CCTATACGCG GTCGTACCTG GCCTTCTACA TGGCCATCAC CGTGATCGCC
TGCATCTTCT GCCTGATGCA TCTGCGCTCG GCCGCCATCA CGGTCACGGC GATCGTCAAC
GGGGCGTTCA TCGCCTTCTT CGCGGCGACG GGCCAGCCGA CCTTCATTGC GATCGCCATC
AACATGGCCC TGGTGTCGTT CGGCCTGCTG GTCATCCTGA TGGTCAACTA CCGCGACTTC
ACCCTCATGG TGAACGCGCA GACCGAAGCC CGACGCCGCG AAGCGGAGCA AAGCCGCCTG
CTGCACATGA TCGACGACAT GCCGGTCGCC GTCATGACGG TGGAGCCGGG CACGTTCGCC
ATCAACTACG CCAACAACAC GTCCAAGCGG CTGATCGACC GGATCGCGCA CCTGCTGCCG
ATCGAGCCCG ACGCCCTGCT CGGCACCTCC ATCGACGTCT TCCACGCGCA TCCGGAACAC
CAGCGCCGGC TGCTCGCCGA TCCGGCCAAC CTGCCGCACA ACACGCGCAT CCGGCTCGGG
CCCGAGGTGC TGGACCTGAA GGTCTCGGCG GTCCGGGCCA ACGACGGCAG CTACATCGGG
CCCATGCTGA CCTGGGCGCT GGTGACCAAG GAGGTGGAGG CCGAGAACCG CATCCGCCAG
CTCGCCCACT ACGACACGCT CACCGGCCTG GCCAACCGCA CCAACTTCCG CGAACAGCTC
GATGCCCGCC TCGCGGCGCC CGAGGCCCGC CTCGGCTTGC TGTATATCGA CCTCGACGGC
TTCAAGCTCG TCAACGACAC CAAGGGGCAC CGGGCCGGAG ACGCGCTGCT CGAACGGGTC
GCGCAGCGGC TGCGCGCGGT CTGTGACCGC CCCGGCATGG CCATCGCGCG GCTGGGCGGC
GACGAATTCG CCGTGCTCGT GCCGCACGAC GATGCCGATC GCGCGGCGAC GCTGGCCACC
GCGCTGATCG AAGCACTCGG TGCGCCGTAT GCCCTCGGTG CCGACCAGAA CGTCCGGATC
GGAGCATCGA TCGGCATCGC GCTCGCCCCC GCCCACGGCC GCGATACCGA GAACCTGCTC
GCCCGCGCCG ACATCGCGCT CTACGCCGCC AAGGCCGCCG GCAAGGGCCT GGCACGCCTG
TTCTGCGCGG ACATGGAAAC GCGCATCCAG GCGCGCGCGC TGCTGGAAGC GCAGCTGCGC
GCCGCCCTCG AGCACCAGGA CCGCCTGTTC GTCTTCTACC AGCCGATCGT CGATGTCGCG
ACCGGCAAGG TCACCGCGCG CGAAGCGCTG GTGCGCTGGC ACCATGCGGA ACGGGGCTGG
GTCCCGCCCG ACGAGTTCGT CCCCATTGCC GAACAGAGCG GCCTCATCGA CCAGCTCGGC
CGCTTCGTGC TGCATCGCGC CTGCCGCGAA GCGACCCGCT GGGAAGACGG CGCGCGCGTG
GCCGTCAATG TGTCGCCCAT GCAGCTGGGC AAGGCGACAC TGGCGCAGAC GGTGCACGCG
GCGCTGATCG ACTCCGGCCT GGCGCCCGAC CGCCTCGAGA TCGAGGTCAC GGAGACCGCC
CTCATCCAGA ACGAAGCGGA AAGCTTCGAA GACCTGCGCC AGCTCTATGA CATGGGCGTG
CGCGTCGCCC TCGACGACTT CGGCACCGGC TATTCATCGC TGGCCCATCT GCGGGCCTTC
CCGTTCGACA AGATCAAGAT CGACCGCTCG TTCGTCCGCG ACCTTCTCGA GCGGCCGGAC
AGCGCGGTCC TGGTCAGAGC CATCGCCGAC CTCGGCCGGC AGCTCGGCGT GACCACCGTG
GCCGAAGGCG TGGAAACGCA AGCGCACGTG AGAGGCATCC GGGAAGCCGG ATGCACCGAG
GCCCAGGGGT ACTACTACGG CCGGCCGGCG CCGAGCGACG AAGACCGGCC GCGCGTGGAG
GCCTGCGGCC CAGCGCGGAC GGATGCCGCG TTGGCTTCCT GCGCCGGCTG A
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| Protein sequence | MTMKALAGRV ARFMGVPADN PELLKAQYRA FSRQLPMMYF ILISSTWAVA LTYRAITPAW
LTVGIPLLLT LACAIRVLHW WQSRRIDPTP ELALGALTRT NRLASVIAVS FTAWSLALFH
YGDAYTRSYL AFYMAITVIA CIFCLMHLRS AAITVTAIVN GAFIAFFAAT GQPTFIAIAI
NMALVSFGLL VILMVNYRDF TLMVNAQTEA RRREAEQSRL LHMIDDMPVA VMTVEPGTFA
INYANNTSKR LIDRIAHLLP IEPDALLGTS IDVFHAHPEH QRRLLADPAN LPHNTRIRLG
PEVLDLKVSA VRANDGSYIG PMLTWALVTK EVEAENRIRQ LAHYDTLTGL ANRTNFREQL
DARLAAPEAR LGLLYIDLDG FKLVNDTKGH RAGDALLERV AQRLRAVCDR PGMAIARLGG
DEFAVLVPHD DADRAATLAT ALIEALGAPY ALGADQNVRI GASIGIALAP AHGRDTENLL
ARADIALYAA KAAGKGLARL FCADMETRIQ ARALLEAQLR AALEHQDRLF VFYQPIVDVA
TGKVTAREAL VRWHHAERGW VPPDEFVPIA EQSGLIDQLG RFVLHRACRE ATRWEDGARV
AVNVSPMQLG KATLAQTVHA ALIDSGLAPD RLEIEVTETA LIQNEAESFE DLRQLYDMGV
RVALDDFGTG YSSLAHLRAF PFDKIKIDRS FVRDLLERPD SAVLVRAIAD LGRQLGVTTV
AEGVETQAHV RGIREAGCTE AQGYYYGRPA PSDEDRPRVE ACGPARTDAA LASCAG
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