Gene RSc1542 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1542 
Symbol 
ID1220372 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1648310 
End bp1649575 
Gene Length1266 bp 
Protein Length421 aa 
Translation table11 
GC content72% 
IMG OID637237926 
Productputative transmembrane protein 
Protein accessionNP_519663 
Protein GI17546261 
COG category[R] General function prediction only 
COG ID[COG0446] Uncharacterized NAD(FAD)-dependent dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0588394 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCCCCT CCCCCAACGC CAACCCGAAC CCGCCCCACC ATCCGCCCAC CGAAGTCCTG 
ATCATCGGTG GCGGCGCCGC CGGCATCGGC GTGGCCGCGA GCCTGCGCCG CCGCCGGCCG
CAGTTGGACA TCGCGATCAT CGAGCCGAGC GATGCCCATT ACTACCAGCC GGCCTGGACG
CTGGTCGGCG GCGGCGCGTT CGACGCTGGC CGCACCGTGC GGCAGACCGA TGCGCTGATC
CCGGCAGGCG TGCGCCGCAT CCGCGCCAGC GCCACGCACA TCGATACCGA GACCCACCGC
GTGTCGCTCG ATGACGGTCG CAGCGTGCGG TACAGCCAGC TGATCGTCAG CCCCGGCCTG
CGACTGGCCT GGGAGCGCAT CGACGGGCTG GAGGCGGCGC TGGGGCAGCA TGGCGTCACC
TCCAACTACC GCTTCGACCT CGCCCCCTAC ACCTGGTCGC TGGTGCGCAG CCTGCGCTCG
GGGCGCGCGC TGTTCACGCA GCCGGCCATG CCGATCAAGT GCGCCGGCGC GCCGCAGAAG
GCGATGTACC TGGCCTGCGA CCACTGGCGC CGCACCGGTG TGCTCGATCG CATCGACGTG
GAGTTCAATC TGACCGGCAC CACGCTGTTC GGCGTCGAAG CCTTCGTGCC GGCGCTCATG
CGCTACGTGG AGCACTACCG CGCCGGGCTG GCCTTCGGCT CCACGCTGGT GGCTGTCGAC
GGCCCGGCGC ACACGGCCTG GTTCGAGCAC AAGAACGCGG ACGGCGAAAC GGTCCGCGCT
GCCAAGCGCT TCGACCTGCT GCACGCGGTG CCGCCCCAGG TGGCGCCTGC CTTCATCGCG
CAGAGCGGCC TGGGCGATGC CGCCGGCTGG TGCGAAGTCG ACCCGGCCAC ACTGCAGCAC
GTCCGCCACG CCGATGTGTT CTCGCTCGGC GACGCCTGCT CGACACCCAA CGCCAAGACC
GCGGCCGCCG TGCGCAAGCA GGCCGTGGTG GTCGCGGAAA ACCTGCTCGC CCACCGCGAC
CGGCAACCCC TGCCGACACG CTACGACGGC TACGGCGGCT GTCCCCTGAC GGTCGAGCGC
GGCAAGGTCG TCCTCGCGGA GTTCGGCTAC GGCGGCAAGC TGCTGCCGAC CTTTCCGCTG
GCGCCGACCG TGGCGCGCCA GTCGGCATGG TGGCTCAAGA CCACCGTGCT GCCGTGGCTG
TACTGGAACG GGCTGCTCAA GGGCCGCGAG TGGCTGGCCC GCCCGAGCCT GCCGGTGGAG
CGCTGA
 
Protein sequence
MPPSPNANPN PPHHPPTEVL IIGGGAAGIG VAASLRRRRP QLDIAIIEPS DAHYYQPAWT 
LVGGGAFDAG RTVRQTDALI PAGVRRIRAS ATHIDTETHR VSLDDGRSVR YSQLIVSPGL
RLAWERIDGL EAALGQHGVT SNYRFDLAPY TWSLVRSLRS GRALFTQPAM PIKCAGAPQK
AMYLACDHWR RTGVLDRIDV EFNLTGTTLF GVEAFVPALM RYVEHYRAGL AFGSTLVAVD
GPAHTAWFEH KNADGETVRA AKRFDLLHAV PPQVAPAFIA QSGLGDAAGW CEVDPATLQH
VRHADVFSLG DACSTPNAKT AAAVRKQAVV VAENLLAHRD RQPLPTRYDG YGGCPLTVER
GKVVLAEFGY GGKLLPTFPL APTVARQSAW WLKTTVLPWL YWNGLLKGRE WLARPSLPVE
R