Gene RSc1526 details

Gene Information

• Locus tag: RSc1526
• Symbol: hflB
• ID: 1220355
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: +
• Start bp: 1628841
• End bp: 1630727
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637237909
• Product: ATP-dependent zinc metallopeptidase
• Protein accession: NP_519647
• Protein GI: 17546245
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0465] ATP-dependent Zn proteases
• TIGRFAM ID: [TIGR01241] ATP-dependent metalloprotease FtsH

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.155575
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 25
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGAATAACA ACTGGTTTCA GAAGGCGGCC ATCTGGCTGG TGATTGCCTT GGTGCTGTTC 
ACCGTCTTCA AGCAGTTCGA CAAGCCGCGC GCCCAGGAAG GTGTGACGTA CTCGCAATTC 
ATGGACGATG CGAAAGGCGG CAAGATCAAG CGCGTCGAAG TGCAGGGCCG TAACCTGCTG 
GTGACGCCCA ACGAGGGCGG CAAGTACACC ATCATTTCGC CGGGCGACAT CTGGATGGTC 
GGCGACCTGA TGAAGTACGG CGTTCAGGTG ACCGGCAAGG CGGAGGAAGA GCAAGGTGTG 
CTTCTTTCTG CGCTTTACTA CCTCGGCCCG ACCCTGCTGA TCATCGTGTT CTGGTTCTAC 
ATGATGCGAC AGATGCAAGG CGGCGGGAAA GGCGGCGCCT TCTCGTTCGG CAAGTCGCGG 
GCGCGGCTGA TCGACGAGAA CAACAACAGC GTCACGTTCG CCGATGTGGC GGGTTGCGAC 
GAATCCAAGG AGGAAGTGGT CGAGCTGGTC GACTTCCTCA AGGATCCTCA AAAATTCCAG 
AAGCTGGGTG GCCGCATTCC GCGCGGCGTA CTGCTGGTCG GCCCCCCGGG CACCGGCAAG 
ACGCTGCTGG CCCGCGCCAT CGCCGGCGAA GCCAAGGTGC CGTTCTTCAG CATCTCCGGC 
TCGGACTTCG TTGAAATGTT CGTCGGCGTG GGCGCGGCCC GCGTGCGCGA CATGTTCGAG 
AACGCCAAGA AGCAGGCGCC GTGCATCGTC TTCATCGACG AAATCGACGC TGTCGGCCGC 
CATCGCGGCG CCGGCATGGG CGGCGGCAAT GACGAGCGCG AGCAGACCCT CAACCAGATG 
CTGGTCGAGA TGGACGGCTT CGAGGCCAAC TCGGGCGTGA TCGTCATCGC CGCGACCAAC 
CGTGCCGACG TGCTGGACAA GGCGCTGCTG CGTCCGGGCC GCTTTGACCG CCAGGTGTAC 
GTGGGCCTGC CGGATATCCG CGGCCGCGAG CAGATCCTCA AGGTCCACAT GCGCAAGGTG 
CCGATCGGCA ACGACGTGGA TGCTTCCGTG CTGGCGCGCG GTACGCCGGG CTTCTCCGGC 
GCGGACCTGG CCAACCTGGT CAACGAGGCT GCGTTGTTCG CCGCCCGCCG CAACAAGCGC 
GTGGTCGACA TGCAGGACTT CGAAGACGCC AAGGACAAGA TCTACATGGG TCCGGAGCGC 
AAGTCGGCCG TGATCCGCGA AGAGGAACGC CGCGCCACGG CGTATCACGA GTCGGGCCAC 
GCCGTGGTGG CCAAGCTGCT GCCCAAGGCC GATCCGGTGC ACAAGGTCAC GATCATGCCG 
CGGGGCTGGG CCGGCGGCCT GACCTGGCAG TTGCCGGAGC ACGACAAGCA CTACGCCTAC 
AAGGACACGA TGCTCGAAGA GATCGCCATC CTGTTCGGCG GCCGTGCTGC GGAAGAGGTG 
TTCCTGGGCG CGATGAGCAC CGGTGCCTCC AACGACTTCG AGCGTGCCAC CAAGATGGCA 
CGCGACATGG TGACGCGCTA CGGCATGAGC GATTCGCTCG GCACCATGGT CTACGTGGAC 
ACCGAGCAGG ACGGTTTCTT CGGCCGCATG TCGTCCAAGA CGGTGTCCGA GGCAACGCAG 
CAGAAGGTCG ATTCGGAGAT CCGCCGCATC GTCGACGAGC AGTACGCGCT GGCCAAGCGC 
CTGCTCGAAG AGAACCGCGA GAAGGTCGAG GCGATGACCG CTGCACTGCT GGAATGGGAA 
ACCATCGACG CCGACCAGGT GAACGACATC ATGGCCGGCA AGCCGCCGCG TCCGCCGCGC 
TATGGTTCGA GCGGTGGCGG CAGCACGCCG CCGAATGGCG GTACGCCTGC GGGTGTGACG 
CCGGGCAACG TGCCTGCCAC GGCTTGA 

 

Protein sequence

MNNNWFQKAA IWLVIALVLF TVFKQFDKPR AQEGVTYSQF MDDAKGGKIK RVEVQGRNLL 
VTPNEGGKYT IISPGDIWMV GDLMKYGVQV TGKAEEEQGV LLSALYYLGP TLLIIVFWFY 
MMRQMQGGGK GGAFSFGKSR ARLIDENNNS VTFADVAGCD ESKEEVVELV DFLKDPQKFQ 
KLGGRIPRGV LLVGPPGTGK TLLARAIAGE AKVPFFSISG SDFVEMFVGV GAARVRDMFE 
NAKKQAPCIV FIDEIDAVGR HRGAGMGGGN DEREQTLNQM LVEMDGFEAN SGVIVIAATN 
RADVLDKALL RPGRFDRQVY VGLPDIRGRE QILKVHMRKV PIGNDVDASV LARGTPGFSG 
ADLANLVNEA ALFAARRNKR VVDMQDFEDA KDKIYMGPER KSAVIREEER RATAYHESGH 
AVVAKLLPKA DPVHKVTIMP RGWAGGLTWQ LPEHDKHYAY KDTMLEEIAI LFGGRAAEEV 
FLGAMSTGAS NDFERATKMA RDMVTRYGMS DSLGTMVYVD TEQDGFFGRM SSKTVSEATQ 
QKVDSEIRRI VDEQYALAKR LLEENREKVE AMTAALLEWE TIDADQVNDI MAGKPPRPPR 
YGSSGGGSTP PNGGTPAGVT PGNVPATA