Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1526 |
Symbol | hflB |
ID | 1220355 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1628841 |
End bp | 1630727 |
Gene Length | 1887 bp |
Protein Length | 628 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637237909 |
Product | ATP-dependent zinc metallopeptidase |
Protein accession | NP_519647 |
Protein GI | 17546245 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0465] ATP-dependent Zn proteases |
TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.155575 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAATAACA ACTGGTTTCA GAAGGCGGCC ATCTGGCTGG TGATTGCCTT GGTGCTGTTC ACCGTCTTCA AGCAGTTCGA CAAGCCGCGC GCCCAGGAAG GTGTGACGTA CTCGCAATTC ATGGACGATG CGAAAGGCGG CAAGATCAAG CGCGTCGAAG TGCAGGGCCG TAACCTGCTG GTGACGCCCA ACGAGGGCGG CAAGTACACC ATCATTTCGC CGGGCGACAT CTGGATGGTC GGCGACCTGA TGAAGTACGG CGTTCAGGTG ACCGGCAAGG CGGAGGAAGA GCAAGGTGTG CTTCTTTCTG CGCTTTACTA CCTCGGCCCG ACCCTGCTGA TCATCGTGTT CTGGTTCTAC ATGATGCGAC AGATGCAAGG CGGCGGGAAA GGCGGCGCCT TCTCGTTCGG CAAGTCGCGG GCGCGGCTGA TCGACGAGAA CAACAACAGC GTCACGTTCG CCGATGTGGC GGGTTGCGAC GAATCCAAGG AGGAAGTGGT CGAGCTGGTC GACTTCCTCA AGGATCCTCA AAAATTCCAG AAGCTGGGTG GCCGCATTCC GCGCGGCGTA CTGCTGGTCG GCCCCCCGGG CACCGGCAAG ACGCTGCTGG CCCGCGCCAT CGCCGGCGAA GCCAAGGTGC CGTTCTTCAG CATCTCCGGC TCGGACTTCG TTGAAATGTT CGTCGGCGTG GGCGCGGCCC GCGTGCGCGA CATGTTCGAG AACGCCAAGA AGCAGGCGCC GTGCATCGTC TTCATCGACG AAATCGACGC TGTCGGCCGC CATCGCGGCG CCGGCATGGG CGGCGGCAAT GACGAGCGCG AGCAGACCCT CAACCAGATG CTGGTCGAGA TGGACGGCTT CGAGGCCAAC TCGGGCGTGA TCGTCATCGC CGCGACCAAC CGTGCCGACG TGCTGGACAA GGCGCTGCTG CGTCCGGGCC GCTTTGACCG CCAGGTGTAC GTGGGCCTGC CGGATATCCG CGGCCGCGAG CAGATCCTCA AGGTCCACAT GCGCAAGGTG CCGATCGGCA ACGACGTGGA TGCTTCCGTG CTGGCGCGCG GTACGCCGGG CTTCTCCGGC GCGGACCTGG CCAACCTGGT CAACGAGGCT GCGTTGTTCG CCGCCCGCCG CAACAAGCGC GTGGTCGACA TGCAGGACTT CGAAGACGCC AAGGACAAGA TCTACATGGG TCCGGAGCGC AAGTCGGCCG TGATCCGCGA AGAGGAACGC CGCGCCACGG CGTATCACGA GTCGGGCCAC GCCGTGGTGG CCAAGCTGCT GCCCAAGGCC GATCCGGTGC ACAAGGTCAC GATCATGCCG CGGGGCTGGG CCGGCGGCCT GACCTGGCAG TTGCCGGAGC ACGACAAGCA CTACGCCTAC AAGGACACGA TGCTCGAAGA GATCGCCATC CTGTTCGGCG GCCGTGCTGC GGAAGAGGTG TTCCTGGGCG CGATGAGCAC CGGTGCCTCC AACGACTTCG AGCGTGCCAC CAAGATGGCA CGCGACATGG TGACGCGCTA CGGCATGAGC GATTCGCTCG GCACCATGGT CTACGTGGAC ACCGAGCAGG ACGGTTTCTT CGGCCGCATG TCGTCCAAGA CGGTGTCCGA GGCAACGCAG CAGAAGGTCG ATTCGGAGAT CCGCCGCATC GTCGACGAGC AGTACGCGCT GGCCAAGCGC CTGCTCGAAG AGAACCGCGA GAAGGTCGAG GCGATGACCG CTGCACTGCT GGAATGGGAA ACCATCGACG CCGACCAGGT GAACGACATC ATGGCCGGCA AGCCGCCGCG TCCGCCGCGC TATGGTTCGA GCGGTGGCGG CAGCACGCCG CCGAATGGCG GTACGCCTGC GGGTGTGACG CCGGGCAACG TGCCTGCCAC GGCTTGA
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Protein sequence | MNNNWFQKAA IWLVIALVLF TVFKQFDKPR AQEGVTYSQF MDDAKGGKIK RVEVQGRNLL VTPNEGGKYT IISPGDIWMV GDLMKYGVQV TGKAEEEQGV LLSALYYLGP TLLIIVFWFY MMRQMQGGGK GGAFSFGKSR ARLIDENNNS VTFADVAGCD ESKEEVVELV DFLKDPQKFQ KLGGRIPRGV LLVGPPGTGK TLLARAIAGE AKVPFFSISG SDFVEMFVGV GAARVRDMFE NAKKQAPCIV FIDEIDAVGR HRGAGMGGGN DEREQTLNQM LVEMDGFEAN SGVIVIAATN RADVLDKALL RPGRFDRQVY VGLPDIRGRE QILKVHMRKV PIGNDVDASV LARGTPGFSG ADLANLVNEA ALFAARRNKR VVDMQDFEDA KDKIYMGPER KSAVIREEER RATAYHESGH AVVAKLLPKA DPVHKVTIMP RGWAGGLTWQ LPEHDKHYAY KDTMLEEIAI LFGGRAAEEV FLGAMSTGAS NDFERATKMA RDMVTRYGMS DSLGTMVYVD TEQDGFFGRM SSKTVSEATQ QKVDSEIRRI VDEQYALAKR LLEENREKVE AMTAALLEWE TIDADQVNDI MAGKPPRPPR YGSSGGGSTP PNGGTPAGVT PGNVPATA
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