Gene RSc1525 details

Gene Information

• Locus tag: RSc1525
• Symbol: rrmJ
• ID: 1220354
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: +
• Start bp: 1628051
• End bp: 1628716
• Gene Length: 666 bp
• Protein Length: 221 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637237908
• Product: ribosomal RNA large subunit methyltransferase J
• Protein accession: NP_519646
• Protein GI: 17546244
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0293] 23S rRNA methylase
• TIGRFAM ID: [TIGR00438] cell division protein FtsJ

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.401808
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 27
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCAAAGA ACAAGTTCAA CCAGTCGTGG CTGCACGACC ATATCAACGA TCCGTACGTG 
AAGCTGGCGC AGCGCGAGGG CTATCGCGCC CGTGCCGCCT ACAAGCTCAA GGAGATCGAC 
GAGCAGGACA AGCTGATCAA GCCGGGCCAG GTCATCGTCG ACCTGGGCGC CGCGCCGGGC 
AGCTGGAGCC AGTACGTGCG CAACAAGCTG GCCGCTTCGC CGCGCGCCAA GGACGGCCGC 
ATCGACGGCG CCATCGTCGC GATCGACATC CTGCCCATGG AGCCGGTGGC CGACGTGACC 
TTCATCCAGG GCGATTTCCG CGAAGAGTCG GTTTTCCAGC AGCTGGAAAC GATCGTGCTG 
GACGCTACGG GCGGCGGCAA GGTAGACCTT GTTTTGTCCG ACATGGCCCC CAATCTCTCC 
GGTGTGGCGT CGGCGGACGC CGCGCGCATG GAGCACATCG CGGAACTGGC CGTGGAATTC 
GCCCAGGCTC ACCTGAAACC CGAGGGCGCG CTGCTGATCA AATGTTTTCA CGGCAGCGGC 
TATAGTCAGA TTGTCGAGAT GTTCAAGCGC CATTTCCGGG TCGTGGCGCC GCGCAAGCCC 
AAGGCTTCCC GCGACAAGTC TTCCGAGACG TTCCTGCTGG GTCGTCAGCT CAAGCATCCG 
GGCTGA 

 

Protein sequence

MAKNKFNQSW LHDHINDPYV KLAQREGYRA RAAYKLKEID EQDKLIKPGQ VIVDLGAAPG 
SWSQYVRNKL AASPRAKDGR IDGAIVAIDI LPMEPVADVT FIQGDFREES VFQQLETIVL 
DATGGGKVDL VLSDMAPNLS GVASADAARM EHIAELAVEF AQAHLKPEGA LLIKCFHGSG 
YSQIVEMFKR HFRVVAPRKP KASRDKSSET FLLGRQLKHP G