| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1492 |
|---|
| Symbol | tISRso14b |
|---|
| ID | 1220321 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 1597010 |
|---|
| End bp | 1597837 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637237875 |
|---|
| Product | ISRSO14-transposase orfB protein |
|---|
| Protein accession | NP_519613 |
|---|
| Protein GI | 17546211 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2801] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0134955 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGATTC GGCGGAAGGT CAGCATCTCC GAGCGTCGCG CCTGCCGGCT TGTCGGGCTG
TCCCGCAGCG TGCTGCATTA CGAAGCGCAA ACTGCGCCAG GAAACGAGAT ACTCAAAGCG
CGGCTGGTTG AGCTGGCGCA TGAGCGTCGG CGCTTTGGTT ACCGGCGACT GCACGTTCTG
CTGGAGCGCG AGGGTCTGCA CGCGAATCAC AAACGCGTAC ACCGGTTATA TCGCGAGGCT
GGCTTGGCTG TGCGGCGTCG GCGGCGACGC CACGGCGTGA TGGTCGAGCG CGAGCGACTG
GCTCTGCCGG CCGCGCCGAA CGAGGTCTGG TCGATAGACT TCGTGATGGA CGCGTTGTCC
AATGGGCGTC GCCTGAAGTG CCTGACCATC GTTGATGACT TCACGAAAGA AGCGGTCGAC
ATCGTCGTAG ACCACGGCAT CTCAGGCTTG TATGTGGCAC GAGCGCTGGA CCATGCGGCG
CGCTTCAGGG GCTACCCCAA AGCGCTGCGC ACGGACCAAG GGCCGGAGTT CACGAGCCGA
GCGCTGGACC AGTGGGCATA CGCCAGCGGC GTGTCCCTGA AATTGATTCA GGCTGGCAAA
CCGACGCAGA ATGCCTACAT CGAGTCGTTC AACGGCAAGT TCCGAGACGA ATGCCTGAAT
GAGCACTGGT TCACGAGCCT TGCCCATGCA CGCGCTGTCA TCGCGGCGTG GCGCCAGGAT
TACAACGAGG CGCGGCCGCA CAGCGCCTTG AATTACCAAC CGCCTGCAGA ATTCGCAGCG
CGGTATCGAG CAACAGCGGT GGCTCCTGCC GCTCAGGAGC AAACTTGA
|
|---|
| Protein sequence | MAIRRKVSIS ERRACRLVGL SRSVLHYEAQ TAPGNEILKA RLVELAHERR RFGYRRLHVL
LEREGLHANH KRVHRLYREA GLAVRRRRRR HGVMVERERL ALPAAPNEVW SIDFVMDALS
NGRRLKCLTI VDDFTKEAVD IVVDHGISGL YVARALDHAA RFRGYPKALR TDQGPEFTSR
ALDQWAYASG VSLKLIQAGK PTQNAYIESF NGKFRDECLN EHWFTSLAHA RAVIAAWRQD
YNEARPHSAL NYQPPAEFAA RYRATAVAPA AQEQT
|
|---|
| |