| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1476 |
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| Symbol | |
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| ID | 1220305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 1580135 |
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| End bp | 1583242 |
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| Gene Length | 3108 bp |
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| Protein Length | 1035 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637237859 |
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| Product | hypothetical protein |
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| Protein accession | NP_519597 |
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| Protein GI | 17546195 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.370096 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0732743 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACGGCTG CCCCGCATGC AGTAGAGTGG AACAACAAAG GCACGTCCAC ACTTGGAGCG
TTGCGGTTGA AAACAATGCG CCGATCTGTC AAGTTCGCCT TGGTTGCCGC GCCCTTCCTG
CTGGTGGCGG CCCTTGCCTA TCTCGTGTCG GACGAATTGC AGACCTCGGC ACTACAGGCG
TCCTACCTGT CGCAGCTCGG CAAGAAGCTG ACCTTCCCAC TGCGGCCCGG CCCGAGCCCG
TCCGTGCACT ACCCCAACTC GGGGCCCTAC GACCGGCGCC TCGGCTACAG CCAGATACCG
ACCTATCTCG AACGTTTGCG CACGCGCGGC TACGCGGTGG CCGAGCAGGC CGTGCCCTCG
GGCACGATGA ATGCGACCAT CAACCTGGGC CTCAACGCGC CGTATCACGA GAAAACCCAG
GCCGGCCTGC AGGTGTTCGA TGCAGCCAAT CGCCTGATCT ACTTCCGGCG CCATCCGGAG
CGGGTCTACG CCGGCTTCGA CACGGTCCCG CCCGCGCTGG TCGACGCGCT GCTGTTCATC
GAGAACCGCA TGCTGCTCGA TCCGGAGCAG CCCCGGCGCA ACCCCGCGGT CGAATGGGGC
CGCTTCTCCC GCGCCATGTG GGACCGCGTG CTGCACATGG CCGACCCGGA GCACGAGTCG
CCCGGCGGCA GCACGCTCGC CACGCAGATC GAGAAATACC GGCACTCGCC CGAAGGCCGC
ACCGAATCGG CCCAGGAGAA GCTGCGGCAG ATGGCATCGG CATCGGTGCG CGCCTACCTC
GACGGCGAGG ACACCACCGT GGTGCGCCAC CAGCTGGTGG TCGATTACCT CAACACCGTG
CCGCTGGGCG CGCGCAACGG CTTCGGCGAA GTGCTCGGCA TCGGCGACGG CCTGTGGGTC
TGGTACGGCC GCGACTTCGC ACAGGTGAAC GCACTGCTTG AGGCGCATTC ACCGGCCACG
CTGGAGGCGC GCGCGCTGGC CTACAAGGAG GCGCTGAGCC TGCTGATCTC GCAGCGGCGC
CCGTCCTACT ACCTGGAGCA CCTCGACGAT CTCGAAACGC TGACCGACGC CTACCTGCGG
CTGCTGGCGG GCGCGGGCAT TGTCCCGGCG GCGCTGCGCG ACGCCGCGCT GGCCCAGTCG
CTCAGGCAGC AGGCACAGCG CGTGCGGGCG CCTGCCGTGG CCACTGAGCG CAAGGGCACC
AATGCCGTGC GGGTCAACCT GGCCGCCATG CTCGGCGTGC CGCGCATGTA CGACCTGGAC
CGGCTCGACC TGACGGTCGG CAGCACGCTG GACGCCGCCC TGCAGCGCGA CGTCACGGCC
GAGCTGATCA AGCTGCGCGA CCCGGCCTAC GCCAAGGCCG CCGGCCTGAT CGGCGACAAG
ATGCTGCAGC ACGGCGACCC GCGTGGCGTC ACCTACAGTT TCACGCTGTT CGAGCGCAGC
GGCGGCACCA ACCGTGTGCT GGTGCAGGCC GACACCTTCG ACCAGCCGTT CGACATCAAC
GAAGGCGTGA AGCTCGACCT GGGCTCGACG GCCAAGCTGC GCACGCTGGT GACCTATCTC
GAGATCGTCG CCGAACTGCA CCAGCGCTAT GCCGCGCTCG CGCCCGCCGC GCTGCGCAAG
GTGGAGGTCT CGAAGCAGAA CCCGATCGAG CGCTGGGCGG TCGACTACCT CGCCCAGGCA
CGGGACCGCA GCCTGGCCGC CATGCTGGCG GCCTCGCTGG AGCGCAAATA CTCGGGCAAC
GCCGGCGAAT GGTTCGCGAC CGGCGGCGGC ATGCAGCACT TCGACAATTT CGAGCCCTGG
GAGAGCTATC AGCAGTTCAC GGTGCGCGAG GGGTTCAAGC ATTCCGTGAA CCTGGTGTTC
GTGCGGCTGA TGCGCGATCT CTCACGCTAC TACCAGCACC AACTGCCCAG CGCCGGCGCC
GAAGCGCTGG AAGACGACAC GTCCCCGCAG CGGCAGCGCT ACCTCGAGCG CTTCGCCGAC
CGCGAGGGCC GCCTCTTCAT GGGACGCTTC TACAGCAAAT ACCGAGGCAA GCGCCCGCAG
GAGCAGGAAG CGATCCTGGT GCAGAGCACG CACGCGACGC CGGTGCGCCT GGCGACCCTT
TTCCGCACGC TCGATCCGCA GGCCGGGCCG GACAAGCTGG CGGCCTTCAT CCGCGCCTAC
CTGCCCGAAG CCGGGCTCGA TGCGTCGGCC GTCGCCAAGC TCTACGACAA GTACGGGCCG
CAGCGCTTCG ACCTGGCCGA CCGCGGCTAC ATCGCGCGGC TGCATCCGCT CGAGCTGTGG
CTGGTCGCCT ATCTGCGCCA GCATCCGCAG GCGACGCTCG CGCAGGTCAA CCAGGCCAGC
GCCGCCGAGC GCATCGAGGT CTACAAGTGG CTGCTGAAAT CGCACCGCAA GGGCGCCCAG
GACAAGCGCA TCCGGCAGAT GCTCGAAATC GAGGCCTTCC AGCAGATCCA CCAGGCGTGG
AAGCGGCTCG GCTATCCGTT CGACGCGCTG GTGCCGTCCT ACGGCACGGC CATCGGCGCC
AGCGCCGACC GCCCGGCCGC GCTGGCCGAG CTGATGGGCA TCCTCGAGAA CGACGGCCTG
CGCATGCCGA CCGTACGCAT CGACCGCCTG CATTTCGCCG CCGGCACGCC CTATGAGGTC
AGCCTGTGCC GCACCCCTGC CACGGGCGAG CGCGTGCTGC CGCCGGAGAT TCCGCAACTG
GTCAAGGCGG CGCTGGCCGA GGTGGTCGAA GGCGGCACGG CCAAGCGGGT GGCCAATACC
TTCGTCCTGC CCGACGGCAG CGCCGTGCCG GTGGGCGGCA AGACCGGCAC CGGCGACAAC
CGCTACAAGA CCTTCAGCCG CGGCGGCGGC CTGATCTCCG AGCGCGTGGT GAGCCGCTCC
GGCGCCTTCG TGTTCTACCT GGGCGAGCGC TACTTCGGCA CCGTGGTGGC CTATGTGGCC
GGCCCCGAGG CCGCCAGGTA CAAATTCACC AGCGCCCTGA CCACGCAGGT GCTCAAGGTG
CTGGCGCCCA CGCTGATGCA CCATCTCGAC CTGGGCGGCC CCGGCGCGGC CCGCGGTTGC
GAAGTGCCCC AGGCCGCGGT CACGGCGACG GCGCAGCCGC TCGATTAG
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| Protein sequence | MTAAPHAVEW NNKGTSTLGA LRLKTMRRSV KFALVAAPFL LVAALAYLVS DELQTSALQA
SYLSQLGKKL TFPLRPGPSP SVHYPNSGPY DRRLGYSQIP TYLERLRTRG YAVAEQAVPS
GTMNATINLG LNAPYHEKTQ AGLQVFDAAN RLIYFRRHPE RVYAGFDTVP PALVDALLFI
ENRMLLDPEQ PRRNPAVEWG RFSRAMWDRV LHMADPEHES PGGSTLATQI EKYRHSPEGR
TESAQEKLRQ MASASVRAYL DGEDTTVVRH QLVVDYLNTV PLGARNGFGE VLGIGDGLWV
WYGRDFAQVN ALLEAHSPAT LEARALAYKE ALSLLISQRR PSYYLEHLDD LETLTDAYLR
LLAGAGIVPA ALRDAALAQS LRQQAQRVRA PAVATERKGT NAVRVNLAAM LGVPRMYDLD
RLDLTVGSTL DAALQRDVTA ELIKLRDPAY AKAAGLIGDK MLQHGDPRGV TYSFTLFERS
GGTNRVLVQA DTFDQPFDIN EGVKLDLGST AKLRTLVTYL EIVAELHQRY AALAPAALRK
VEVSKQNPIE RWAVDYLAQA RDRSLAAMLA ASLERKYSGN AGEWFATGGG MQHFDNFEPW
ESYQQFTVRE GFKHSVNLVF VRLMRDLSRY YQHQLPSAGA EALEDDTSPQ RQRYLERFAD
REGRLFMGRF YSKYRGKRPQ EQEAILVQST HATPVRLATL FRTLDPQAGP DKLAAFIRAY
LPEAGLDASA VAKLYDKYGP QRFDLADRGY IARLHPLELW LVAYLRQHPQ ATLAQVNQAS
AAERIEVYKW LLKSHRKGAQ DKRIRQMLEI EAFQQIHQAW KRLGYPFDAL VPSYGTAIGA
SADRPAALAE LMGILENDGL RMPTVRIDRL HFAAGTPYEV SLCRTPATGE RVLPPEIPQL
VKAALAEVVE GGTAKRVANT FVLPDGSAVP VGGKTGTGDN RYKTFSRGGG LISERVVSRS
GAFVFYLGER YFGTVVAYVA GPEAARYKFT SALTTQVLKV LAPTLMHHLD LGGPGAARGC
EVPQAAVTAT AQPLD
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