| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1468 |
|---|
| Symbol | |
|---|
| ID | 1220297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 1570710 |
|---|
| End bp | 1573094 |
|---|
| Gene Length | 2385 bp |
|---|
| Protein Length | 794 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637237851 |
|---|
| Product | oxidoreductase protein |
|---|
| Protein accession | NP_519589 |
|---|
| Protein GI | 17546187 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1529] Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs |
|---|
| TIGRFAM ID | [TIGR02416] carbon-monoxide dehydrogenase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.277842 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCTC CCGCAGAACC CAACCGCCAC CTGATCGGCG CGGCCGTCAA GCGCAAGGAG
GACTACCGCT TCCTGACGGG CGCGGGCCAG TACACCGACG ACGTGGTGCA GGCACACCAG
TCCTACGCCG TGTTCCTGCG CTCGCCGTAT GCGCACGCGC GCATTGTCCG CATCGATGCC
GAAGCCGCCC GCAAGCAGCG CGGCGTGCTC GCCGTGCTCA CGGGCGAGGA CCTTGCCACC
GACAAGGTCA ACGGCTTGCC GTGCGGCTGG CTGATCCACA GCCTCGACGG CTCGCCGATG
AAGGAGCCGC CCCACCCCGT GCTCGCGCAG GGCAAGGTGC GCCACGTGGG CGACCAGGTC
GCGCTGGTGG TGGCCGAGTC GGTGAAGATC GCCAAGGATG CCGTCGAGCT GATCGACGTG
GAATATGAAG AGCTGCCCGC CGTGGTCGAC CCTGCCGCGG CAAGCACCGC CGGCACCGCG
GTCCACGACG GCGTGCCCGA CAACACCTGC TACACCTGGG GCCACGGCGA CAAGGCTGCC
ACCGACGCCG CCTTCGCCCG CGCCGCGCAT GTCACCCGGC TCGACATCGT CAACAACCGG
CTGATCCCGA ACGCCATCGA GCCGCGTGCC GTGAACGCGA GCTACTCGCG GCAGGACGAC
AGCTACACGC TCTATGTCGC CAACCAGAAC CCGCACGTCG AGCGGCTGCT GATGTCGGCG
TTCGTGCTGG GGCTGTCCGA GGCCAAGGTG CGCGTGATCG CGCCCGACGT GGGCGGCGGC
TTCGGCTCGA AGATCTTCCT GTACCCGGAA GACGTGGCGC TGACCTGGGC ATCGAAGAAG
GTCGGCCGGC CGATCAAGTG GACGGCCGAG CGTTCCGAGT CCTTCCTGAC CGACGCGCAT
GGCCGCGATC ACGTCACGCA CGCAGAACTG GCGCTCGACG CGCAAGGCAA CTTCCTCGGC
ATGCGCGTGC ACACCATCGC CAACATGGGT GCGTACCTGT CGACGTTCGC CAGCAGCGTG
CCGACCATCC TGTATGCCAC GCTGCTCGCC GGGCAGTACC GGACGCCCGC CATCTACGCG
GAAGTCAAGG CGGTGTTCAC CAACACCGCG CCGGTCGATG CCTATCGGGG TGCCGGGCGG
CCGGAAGCCA CCTATGTGGT CGAGCGGCTG GTCGAGACCG CGGCGCGCGA GCTGCAGATC
GACCCGGCCG AACTGCGCCG CCGCAACTTC ATCCGCAGCT TCCCGTATGC CACGCCGGTC
GGCCTGACGT ATGACACGGG CGACTACGAA CCCTGCCTGG ACCGCGCCAT CGAACTGGCC
GACGTGCCGG GCTTGCGCGC CCGCCGCGAC GCCTCGCGCG CCAAGGGCCG GCTGCGCGGC
ATGGGCTACT CCTGCTACAT CGAGGCGTGC GGGCTGGCGC CGTCCAACAT CGCCGGGGCG
CTGGGCGCGC GCGCGGGCCT GTTCGAGGTG GGCGAGATCC GCGTGCACCC GACCGGCTCC
GTCACCGTGT TCACCGGCTC GCACAGCCAC GGACAAGGGC ACGAGACGAC CTTCGCGCAG
GTGGTGGCCG ATCGCCTGGG CGTGCCGATC GAGAACGTCG AGATCGTGCA CGGCGATACC
GGGCGCATCC CCTTCGGCAT GGGCACGTAC GGCTCGCGCT CGATCGCGGT GGGCGGCTCG
GCCGTCATGA AGGCGCTCGA CAAGATCGAG GCCAAGGCCA AGAAGATCGC CGCGCACCTG
CTGGAAGCCT CCGCCGAGGA CATCGAGTTC AAGGACGGCG TCTTCCGCGT GGCCGGCACC
GACCGCACCA AGACCTTCGG CGAGGTCGCG CTCACGGCCT ATGTGCCGCA CAACTACCCC
CTCGACAAGC TCGAGCCGGG CCTGAACGAA AACGCCTTCT ACGACCCGGC CAACTTCACC
TACCCGGCCG GCGCCTACAT TTGCGAGGTG GAGGTCGACC CCGAGACCGG CGAGGTGCGC
ATCGACCGCT TCGTGGCGGT GGACGACTTC GGCAACATCA TCAACCCGAT GATCGTCGAG
GGCCAGGTGC ACGGCGGACT CGGCCAGGGC ATCGGCCAGG CGCTGCTGGA GGGCTGCGTG
TACGACGACA GCGGCCAGCT GCTGACCGGC TCCTACATGG ACTACGCCAT GCCGCGCGCC
GACGACCTGC CGAGCTTCAC CGTGGAGACC GCCAAGGGCA CGCCCTGCAC GCACAACCCG
CTGGGCGTGA AGGGCTGCGG CGAGGCCGGC GCGATCGGCT CGCCGCCGGC GCTGATCAAC
GCCATCGTCG ATGCCCTGGC GCCGCTGGGC GTGAAGGACA TCCAGATGCC GGCCACGCCC
CACCGCGTCT GGCGGGCCAT CCAATCCGCG CGGGCGAATG CCTGA
|
|---|
| Protein sequence | MNAPAEPNRH LIGAAVKRKE DYRFLTGAGQ YTDDVVQAHQ SYAVFLRSPY AHARIVRIDA
EAARKQRGVL AVLTGEDLAT DKVNGLPCGW LIHSLDGSPM KEPPHPVLAQ GKVRHVGDQV
ALVVAESVKI AKDAVELIDV EYEELPAVVD PAAASTAGTA VHDGVPDNTC YTWGHGDKAA
TDAAFARAAH VTRLDIVNNR LIPNAIEPRA VNASYSRQDD SYTLYVANQN PHVERLLMSA
FVLGLSEAKV RVIAPDVGGG FGSKIFLYPE DVALTWASKK VGRPIKWTAE RSESFLTDAH
GRDHVTHAEL ALDAQGNFLG MRVHTIANMG AYLSTFASSV PTILYATLLA GQYRTPAIYA
EVKAVFTNTA PVDAYRGAGR PEATYVVERL VETAARELQI DPAELRRRNF IRSFPYATPV
GLTYDTGDYE PCLDRAIELA DVPGLRARRD ASRAKGRLRG MGYSCYIEAC GLAPSNIAGA
LGARAGLFEV GEIRVHPTGS VTVFTGSHSH GQGHETTFAQ VVADRLGVPI ENVEIVHGDT
GRIPFGMGTY GSRSIAVGGS AVMKALDKIE AKAKKIAAHL LEASAEDIEF KDGVFRVAGT
DRTKTFGEVA LTAYVPHNYP LDKLEPGLNE NAFYDPANFT YPAGAYICEV EVDPETGEVR
IDRFVAVDDF GNIINPMIVE GQVHGGLGQG IGQALLEGCV YDDSGQLLTG SYMDYAMPRA
DDLPSFTVET AKGTPCTHNP LGVKGCGEAG AIGSPPALIN AIVDALAPLG VKDIQMPATP
HRVWRAIQSA RANA
|
|---|
| |