Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1446 |
Symbol | hipA |
ID | 1220275 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 1548504 |
End bp | 1549841 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637237829 |
Product | putative HIPA transcription regulator protein |
Protein accession | NP_519567 |
Protein GI | 17546165 |
COG category | [R] General function prediction only |
COG ID | [COG3550] Uncharacterized protein related to capsule biosynthesis enzymes |
TIGRFAM ID | [TIGR03071] HipA N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCATC CCGAACTGCA TCTGTGGATG AACGGCGAGC ATGTCGGCAT CTGGACCGCC AGCCGCGCCG GCGTGCCGAT CCTGCGCTAT GACGACGCCT GGCTGCGCTC GCCCAACATG CGGCCGCTGT CGCTGTCGCT GCCGATCCCG GCCGGTGTGC CCGAGCTGCG CGGCCAGGTG GTCGACGACT ACTTCGACAA CCTGCTGCCC GAGGCCCAGC CCATCCGCGA GCGCGTGCGG CGCCGCTTCG GCCTCGCCTC CACGGATGCC GCCGAATTGC TGGCCGCCAT CGGCCGCGAC TGCGTGGGCG CCGTGCAACT GCTGCCGCCC GGCATGGCCC CCACCGGCTA CGACCGCATC GACAGCGAGG CGCTCACCGA CAGCCAGGTC GACACGCTGC TGCGCAACCT CACCGCCATG CCCGCGCTGG GCGAGGACGC CGGCGACCCC GACGCCTTCC GCATCTCCAT TGCCGGCGCG CAGGAGAAAA CCGCCCTGCT GCGCATCGGC GATGCCTGGC ACCGGCCGCT GGGCGCCACG CCCACCACGC ACATCCTCAA GCTGCCGCTG GGGCTGATCG GCAACATCCG CGCCGACATG CAGGACTCGG TCGACAACGA ATGGCTGTGC GCGCAGCTGC TGGCGGCCTG GGGGCTGGAG GTGGCGCGCA CCGAGATCGC CCGCTTCGGC GCCAGCAAAG TGCTGGCGGT CGAGCGCTTC GACCGCCGCT GGATGCCGGG CAACGCCTGG ATCGCGCGCC TGCCGCAGGA AGACTTCTGC CAGGCTACAG GCACGCCCGC GCACCGCAAA TACGAAAACG ACGGCGGCCC CGGCATGCGC GCCTGCCTCG ACCTGCTGTC CGCGTCCGAA CACGCCATCG ACGACAAGCG CCGCTTCGTG CTGGCGCAAC TTGCCTTCTG GCTGCTGGCC GCCACCGACG GGCACGCGAA GAACTTCTCG CTGGCGATCG GGCGCGGCGG GCGCTTCCGC ATGACGCCGC TGTATGACGT GCTCTCGGTC TGGCCGATCA TGGGCGACGG GCCGAACCAG CTGTCGCCCT ATCGCGCGCG GCTGGCGATG GCCCTGCGCG GCAAGAACGC GCATGCGCGG CTGGCCGACA TCCACGTGCG CCACTGGCAG GCGCTGGCGG CGCAATCCGG CGTGCCGGAC GCGTTCGCCG GCATGCAGGC GCTGGTCGAG CGCGTGCCGG CGGGTCTCGA GCGGGTCGAG GCGATCCTGC CGCCCGACTT CTCGGGCCGG GTCTGGAGCA GCGTGCGCAC CGGCGTGCTC GCGCAGGCCG AGCGCTTTCT CAACGAACTG GCGTCCGTCA CCCCATGA
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Protein sequence | MAHPELHLWM NGEHVGIWTA SRAGVPILRY DDAWLRSPNM RPLSLSLPIP AGVPELRGQV VDDYFDNLLP EAQPIRERVR RRFGLASTDA AELLAAIGRD CVGAVQLLPP GMAPTGYDRI DSEALTDSQV DTLLRNLTAM PALGEDAGDP DAFRISIAGA QEKTALLRIG DAWHRPLGAT PTTHILKLPL GLIGNIRADM QDSVDNEWLC AQLLAAWGLE VARTEIARFG ASKVLAVERF DRRWMPGNAW IARLPQEDFC QATGTPAHRK YENDGGPGMR ACLDLLSASE HAIDDKRRFV LAQLAFWLLA ATDGHAKNFS LAIGRGGRFR MTPLYDVLSV WPIMGDGPNQ LSPYRARLAM ALRGKNAHAR LADIHVRHWQ ALAAQSGVPD AFAGMQALVE RVPAGLERVE AILPPDFSGR VWSSVRTGVL AQAERFLNEL ASVTP
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