Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1441 |
Symbol | pcaH |
ID | 1220270 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1544149 |
End bp | 1544889 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637237824 |
Product | protocatechuate 3,4-dioxygenase subunit beta oxidoreductase protein |
Protein accession | NP_519562 |
Protein GI | 17546160 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
TIGRFAM ID | [TIGR02422] protocatechuate 3,4-dioxygenase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGATCC CGTATTCGGG CACCGGCGAA TTCGCCCAGC GCGACACCGC GCTGCATCCG CCTGCGCTGA CCCCCGGCTA CAAGACCAGC GTGCTGCGCT CGCCGCGCAA CGCGCTGATC TCGACACTCA ATACGCTGTC GGAGACCACC GCGCCGGTCT TCCACGCTGA CGACCTCGGC TCGCTCGACA ATGACCTGAT CCTCAACTAT GCCAAGGACG GCTTGCCTAT CGGTGAGCGC ATCATCGTGC ACGGCTATGT GCGAGACGAA TTCGGCCGCC CGGTGCCCAA CGCGCTGGTC GAGGTGTGGC AGGCCAACGC CGGCGGCCGG TATCGCCACA AGAAGGACCA GTACATCGCG CCGATCGACC CCAACTTCGG CGGCTGCGGC CGTATGCTGA CGGACGCCAA CGGCTACTAC GCCTATCGCA CCATCAAACC GGGCCCGTAT CCGTGGCGCA ATCGCATCAA CGATTGGAGG CCTTCGCACA TCCATTACTC GCTGTGCGGC GATGGCTGGG CGCAGCGCCT GATCACGCAG ATGTATTTCG AGGGCGATCC GCTGATCGCG CAGTGCCCGA TCATCCGGAC CATCCCCAAT GAGGCGCAGG TGCGCGGCCT CATTGCGCTG CTCGACACGG CCAACCATGT GCCGCTGGAT GCCCGCTGCT ACCGCTTCGA CATCACGCTG CGCGGCCGCC GCGCCACGCA TTTCGAGAAC GCCTTGGCCG GAGCCCGATG A
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Protein sequence | MTIPYSGTGE FAQRDTALHP PALTPGYKTS VLRSPRNALI STLNTLSETT APVFHADDLG SLDNDLILNY AKDGLPIGER IIVHGYVRDE FGRPVPNALV EVWQANAGGR YRHKKDQYIA PIDPNFGGCG RMLTDANGYY AYRTIKPGPY PWRNRINDWR PSHIHYSLCG DGWAQRLITQ MYFEGDPLIA QCPIIRTIPN EAQVRGLIAL LDTANHVPLD ARCYRFDITL RGRRATHFEN ALAGAR
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