Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1414 |
Symbol | lpxD |
ID | 1220238 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1514575 |
End bp | 1515645 |
Gene Length | 1071 bp |
Protein Length | 356 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637237792 |
Product | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
Protein accession | NP_519535 |
Protein GI | 17546133 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
TIGRFAM ID | [TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.654762 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.111844 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGTTTT CGCTTGATGA ACTCGCCGCG TCGCTCGGCG CGACCGTCCA GGGCGATGCC GGCCTGATCG TCAAGTCGAT CGCGCCGCTG GATCAGGCCG GCGCCGATCA GCTCGCCTTC CTTTCCAATC CGCTGTACCT CAACCAGGCC GTGACCTCCG GCGCCGGCGC GATCATCGTA TCGCCCCGCG ACCTGGAGAC GCTCACGGCC GAGGGCCATG CGGCGGGCCG CAACTGGCTC GTGGCCGCCA ACCCGTATGC GGCCTTCGCA CGCATTGCCC AGCGCTTCGC CGCGCTGGGC GCGCGGCCGG CGGCGGCCGG CATCCACCCC AGCGCCAGCG TGGGCGAGGG GGCCGTCGTG CCGGCGTCGT GCTCGATTGG CCCGAACGTC ACGATCGAAG CCGGCGCGGT GCTGGGCGAG CGCGTGCGGA TCGCGGGCAA CAGCTTTATC GGCGCGGACG CGCAGGTCGG CGACGACACG CTGCTCTACG CCAATGTCTC GATCTATCAC GGCTGCGTGG TCGGCGCGCG CTGCATTCTG CATAGCGGCG TGGTGATCGG CGCGGACGGC TTCGGCTTCG CGCCCGATTT CGGCCCGCAG GGCGGCGAGT GGGTGAAGAT TCCCCAGACC GGCCGGGCGA TCGTCGGCGA CGACGTGGAG ATCGGCGCCA ACACCGCCAT CGACCGCGGC GCCATGGCCG ATACCGTGGT CGAGCAGGGT TGCAAGATCG ACAACCAGGT GCAGATCGCG CACAACGTGC ACGTGGGGGC GTACACCGTC ATCGCGGGTT GTGCGGCCAT CTCGGGTAGC ACCAAGATCG GGCGCTACTG CATCATCGGC GGCGCGGCCA ATTTCGCGGG CCACCTGACC ATCGCCGATC GCGTGACCGT TTCGGGCGGC ACGTCGATCA CCAAGTCCAT TCCCAAGCCT GGCCACTTCA CCAGCGTCTT CCCGTTCATG CCCCACGCGG ATTGGGAACG TAACGCGGCC ATCCTCCGTG GCCTGACGCG CATGCGCGAA CGGTTGCAAC AACTGGAACA GCAGGTCAAG CATCTGCAGC AATCATCATG A
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Protein sequence | MSFSLDELAA SLGATVQGDA GLIVKSIAPL DQAGADQLAF LSNPLYLNQA VTSGAGAIIV SPRDLETLTA EGHAAGRNWL VAANPYAAFA RIAQRFAALG ARPAAAGIHP SASVGEGAVV PASCSIGPNV TIEAGAVLGE RVRIAGNSFI GADAQVGDDT LLYANVSIYH GCVVGARCIL HSGVVIGADG FGFAPDFGPQ GGEWVKIPQT GRAIVGDDVE IGANTAIDRG AMADTVVEQG CKIDNQVQIA HNVHVGAYTV IAGCAAISGS TKIGRYCIIG GAANFAGHLT IADRVTVSGG TSITKSIPKP GHFTSVFPFM PHADWERNAA ILRGLTRMRE RLQQLEQQVK HLQQSS
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