Gene RSc1414 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1414 
SymbollpxD 
ID1220238 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1514575 
End bp1515645 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content68% 
IMG OID637237792 
ProductUDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 
Protein accessionNP_519535 
Protein GI17546133 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 
TIGRFAM ID[TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.654762 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.111844 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGTTTT CGCTTGATGA ACTCGCCGCG TCGCTCGGCG CGACCGTCCA GGGCGATGCC 
GGCCTGATCG TCAAGTCGAT CGCGCCGCTG GATCAGGCCG GCGCCGATCA GCTCGCCTTC
CTTTCCAATC CGCTGTACCT CAACCAGGCC GTGACCTCCG GCGCCGGCGC GATCATCGTA
TCGCCCCGCG ACCTGGAGAC GCTCACGGCC GAGGGCCATG CGGCGGGCCG CAACTGGCTC
GTGGCCGCCA ACCCGTATGC GGCCTTCGCA CGCATTGCCC AGCGCTTCGC CGCGCTGGGC
GCGCGGCCGG CGGCGGCCGG CATCCACCCC AGCGCCAGCG TGGGCGAGGG GGCCGTCGTG
CCGGCGTCGT GCTCGATTGG CCCGAACGTC ACGATCGAAG CCGGCGCGGT GCTGGGCGAG
CGCGTGCGGA TCGCGGGCAA CAGCTTTATC GGCGCGGACG CGCAGGTCGG CGACGACACG
CTGCTCTACG CCAATGTCTC GATCTATCAC GGCTGCGTGG TCGGCGCGCG CTGCATTCTG
CATAGCGGCG TGGTGATCGG CGCGGACGGC TTCGGCTTCG CGCCCGATTT CGGCCCGCAG
GGCGGCGAGT GGGTGAAGAT TCCCCAGACC GGCCGGGCGA TCGTCGGCGA CGACGTGGAG
ATCGGCGCCA ACACCGCCAT CGACCGCGGC GCCATGGCCG ATACCGTGGT CGAGCAGGGT
TGCAAGATCG ACAACCAGGT GCAGATCGCG CACAACGTGC ACGTGGGGGC GTACACCGTC
ATCGCGGGTT GTGCGGCCAT CTCGGGTAGC ACCAAGATCG GGCGCTACTG CATCATCGGC
GGCGCGGCCA ATTTCGCGGG CCACCTGACC ATCGCCGATC GCGTGACCGT TTCGGGCGGC
ACGTCGATCA CCAAGTCCAT TCCCAAGCCT GGCCACTTCA CCAGCGTCTT CCCGTTCATG
CCCCACGCGG ATTGGGAACG TAACGCGGCC ATCCTCCGTG GCCTGACGCG CATGCGCGAA
CGGTTGCAAC AACTGGAACA GCAGGTCAAG CATCTGCAGC AATCATCATG A
 
Protein sequence
MSFSLDELAA SLGATVQGDA GLIVKSIAPL DQAGADQLAF LSNPLYLNQA VTSGAGAIIV 
SPRDLETLTA EGHAAGRNWL VAANPYAAFA RIAQRFAALG ARPAAAGIHP SASVGEGAVV
PASCSIGPNV TIEAGAVLGE RVRIAGNSFI GADAQVGDDT LLYANVSIYH GCVVGARCIL
HSGVVIGADG FGFAPDFGPQ GGEWVKIPQT GRAIVGDDVE IGANTAIDRG AMADTVVEQG
CKIDNQVQIA HNVHVGAYTV IAGCAAISGS TKIGRYCIIG GAANFAGHLT IADRVTVSGG
TSITKSIPKP GHFTSVFPFM PHADWERNAA ILRGLTRMRE RLQQLEQQVK HLQQSS