Gene RSc1413 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1413 
Symbol 
ID1220237 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1514010 
End bp1514564 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content66% 
IMG OID637237791 
Producthypothetical protein 
Protein accessionNP_519534 
Protein GI17546132 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2825] Outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.980965 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.265022 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCAT CCATCATGAA ATCCACGCGC ATCACGTTGT CCCGCATGGG CGTGTCCGCT 
GCCTTCGCCG CGCTGGCCGC CGCCAGCTTC GCGCTGCCGG CCACCGCCCA GGAAGCCCGC
ATCGCGGCTG TCAATTCCGA GCGCATCCTG CGCGACTCGC AGCCGGCCAA GGCCGCCCAG
GCCAAGCTGG AAACCGAGTT CGCCAAGCGC GACCGTGAAC TGCAGGATAT GGCCGCCAAG
CTCAAGGCGA TGTCGGACAA GCTGGACAAG GACACCGCCG TGCTGGCCGA TTCCGACCGC
ACGCGCCGCC AGCGCGAGCT GGCCGACATG GACCGCGATT TCCAGCGCAA GCAGCGCGAG
TTCCGTGAAG ACCTGAACCA GCGCCGCAAC GAAGAGTTGG CCGGCGTGCT CGAGCGCGCC
AACCGCGTGA TCCGCCAGAT CGCCGAGCAG CGCAAGTACG ACCTGATCGT GCAGGAGGCG
GTGTACGTGA ACCCGCGCAT CGACATCACC GACGAAGTGC TCAAGGCACT GAACGCCTCG
CAATCGGCGA AATGA
 
Protein sequence
MTASIMKSTR ITLSRMGVSA AFAALAAASF ALPATAQEAR IAAVNSERIL RDSQPAKAAQ 
AKLETEFAKR DRELQDMAAK LKAMSDKLDK DTAVLADSDR TRRQRELADM DRDFQRKQRE
FREDLNQRRN EELAGVLERA NRVIRQIAEQ RKYDLIVQEA VYVNPRIDIT DEVLKALNAS
QSAK