Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1401 |
Symbol | |
ID | 1220225 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 1497887 |
End bp | 1499782 |
Gene Length | 1896 bp |
Protein Length | 631 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637237779 |
Product | hypothetical protein |
Protein accession | NP_519522 |
Protein GI | 17546120 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGATT CCGACGATTT CCCCGGCGAC GACACCAAGC GCTCCGCCAG CGACCCCACG CAGCGGGCCA CCCGCCCGGG CAAGCGCGCC ACGCTCGGCG TGCGCCGCGA CGACACGGGC AACCCGGTGC GCACCACCGG CAAGCCGCTG CGCGCCTCCG ACCTGAACCG CGACCGCCAG CCGCTGCGCC CGTCGCAACG CCGGCCCAAG CCGCAGGAAG GCGACGCCAA GCGGCCCGCC CGAGCGCGCC GCGACGACGA CAGCCAGCCG CCGCGCGAGG CCAAGCCGCG CCGCATGCAG GGGGACCGCC CGCCGCGCCG GTTCGAGGAC CGTCCGCCGC GTCGATTCGA TGACGAACGT CCGCCGCGCA AGTTCGGCGA CGATCAACGT CCGCCCCGTC GCTTCGGCGA TGAGCGGCCG CCTCGCCGGT TCGAGGACCG TCCTCCGCGC CGATTCGATG ACGAACGTCC GCCGCGCAAG TTCGGCGACG ATCAACGTCC GCCCCGTCGC TTCGGCGATG AGCAGCCGCC TCGCCGGTTC GAGGACCGTC CTCCGCGCCG ATTCGATGAC GAGCGGCCGC CGCGCAAGTT CGGCGACGAT CAACGTCCGC CGCGTCGGTT TGACGATGAG CGGCCGCCTC GCCGGTTCGA GGACCGTCCG CCGCGCCGAT TCGATGACGA GCGGCCGCCG CGCAAGTTCG GCGACGATCA ACGTCCGCCC CGTCGCTTCG GCGATGAGCG ACCACCCCGC CGGTTCGAGG ACCGTCCGCC GCGCCGATTC GATGACGAAC GGCCGCCGCG CAGGTCCGGC GACGATCAAC GTCCGCCCCG TCGCTTCGGC GACGAGCGGC CTCCACGCCG TTTCGAGGAC CGCCCACCGC GCCGGTTCGA TGACGAACGG CCACCGCGCA GGTCCGGCGA CGATCAACGC CCGCCCCGTC GCTTCGAGGA CCGTCCTCCG CGCCGGTTCG ATGACGAACG GCCGCCGCGC AGGTCCGGTG ATGATCAGCG CCCTCCGCGC CGCTTCGAGG ACCGTCCGGC CCGCGCGCCG CGCCCCGAAC GCGATGAGCG CGCGCCCCAA CGCGAGGCGG CACACACGCC CGGTTCGGCA CCCCTGGCGG AATCGTCGGG CCTGGTGCGG CTGTCCAAGC GCATGTCCGA GCTGGGCCTG TGCTCGCGCC GCGAGGCGGA CGAGTGGATT CCGCGCGGCT GGGTGCTGGT GGACGGCGAG CCCGTCACCG AACTGGGTTC GCGCGTGCGA CCGGATGCCG AGATCGAGAT CCTCCCGGCC GCGCGCTCCG AACAGGGCGA GCGCGTGACG GTGCTGCTGC ACAAGCCCGT GGGCTATGTG TCGGGCCAGG CGGAAGACGG CTACGAGCCC GCCGCCGCGC TGTTCACGGC GGAGAACCAG TGGGAGGAGG ATCCGACCCG CAAGCATTTC GCCGCCTGGC AGCACAAGGG CCTGGCGCCG GCCGGCCGGC TGGACATCGA CTCCACCGGC CTGCTGGTGC TGACGCAGGA CGGCCGCGTG GCGCGCCACC TGATCGGCGA AGACTCGACC GTCGAGAAGG AATACCTGGT GCGCGTGGTG TGGAATGCGC CGCAGGGCCC CGTCGAGCAC GACATCTCCA AGGTCTTCCC CGAAGACCTG CTGGAGATGC TGCGCCACGG CCTGTCGCTG GACGGCGAGG CGCTCAAGCC CGCCAAGGTC AGCTGGCAGA ACGAAGAGCA GCTGCGCTTC GTGCTGCGCG AAGGCAAGAA GCGCCAGATC CGCCGGATGT GCGAGCAGGT CGGCCTGGAG GTGGTGGGCC TCAAGCGCAT CCGTATGGGC AGCGTCGTGC TGGGCGACCT GCCGGTGGGC AAGTGGCGCT TCCTGGGCCG CTTCGAGAAG TTCTGA
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Protein sequence | MTDSDDFPGD DTKRSASDPT QRATRPGKRA TLGVRRDDTG NPVRTTGKPL RASDLNRDRQ PLRPSQRRPK PQEGDAKRPA RARRDDDSQP PREAKPRRMQ GDRPPRRFED RPPRRFDDER PPRKFGDDQR PPRRFGDERP PRRFEDRPPR RFDDERPPRK FGDDQRPPRR FGDEQPPRRF EDRPPRRFDD ERPPRKFGDD QRPPRRFDDE RPPRRFEDRP PRRFDDERPP RKFGDDQRPP RRFGDERPPR RFEDRPPRRF DDERPPRRSG DDQRPPRRFG DERPPRRFED RPPRRFDDER PPRRSGDDQR PPRRFEDRPP RRFDDERPPR RSGDDQRPPR RFEDRPARAP RPERDERAPQ REAAHTPGSA PLAESSGLVR LSKRMSELGL CSRREADEWI PRGWVLVDGE PVTELGSRVR PDAEIEILPA ARSEQGERVT VLLHKPVGYV SGQAEDGYEP AAALFTAENQ WEEDPTRKHF AAWQHKGLAP AGRLDIDSTG LLVLTQDGRV ARHLIGEDST VEKEYLVRVV WNAPQGPVEH DISKVFPEDL LEMLRHGLSL DGEALKPAKV SWQNEEQLRF VLREGKKRQI RRMCEQVGLE VVGLKRIRMG SVVLGDLPVG KWRFLGRFEK F
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