| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1398 |
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| Symbol | ligA |
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| ID | 1220222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1493654 |
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| End bp | 1496095 |
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| Gene Length | 2442 bp |
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| Protein Length | 813 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637237776 |
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| Product | putative DNA ligase (polydeoxyribonucleotide synthase [NAD+]) protein |
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| Protein accession | NP_519519 |
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| Protein GI | 17546117 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGA CCGAACATCC CGCGTCCGGC GCGTCGCCCG AGACGCGGGC AGCCGCGCTG
CGCGCGACGC TGAACCGCTA CGCCCACGAG TACTACGTGC TGGACCAGCC CAGCGTGCCG
GACGCCGAAT ACGACCGGCT CTACCGCGAG CTGGAAGCCC TGGAAGCCGA ACACCCAGAA
CTGCGGACGC CGGATTCGCC CACGCTGCGG GTCGGCGGCG CCGTGCTGCC GGAGTTCGCG
CCGGTGCGGC ACGTGGTGCC GATGCTCTCG ATCCGCACCG AGACCGACAC CACCGCCGGC
GGCGCGCTGG ACTTCGATGC CAGCGTGCGC CGCGAACTGG GGCTGGCCGA ATCCGATCCG
CCCGTCGAAT ACGCGGCGGA GCTCAAGTTC GATGGCCTGG CGATCAACCT GCGCTACGAG
AAAGGCTTCC TGGTCCAGGC CGCCACGCGC GGCGACGGGG CCACCGGCGA AGACGTTACG
CAGAACATCC GCACCATCCG CCAGATCCCC CTCGGCCTGC GGCCCGTCGG CGGCGCCGTG
CCCGACGTGC TCGAAGTGCG CGGCGAGGTC TACATGCGGC GCGACGATTT CGAGCGCCTC
AATGCCCGCC AGCGCGAGCG CGGCGACAAG ACCTTCGTCA ACCCGCGCAA CACCGCTGCC
GGCGCGGTGC GCCAGCTCGA CCCGAAGATG GCCGCCGAGC GCCCGCTGTC GTTCTTCGCC
TATGGCCTGG GCGAGGCGGC CGGCTGGAGC GGGATGCCCG ACACGCATTC CGGCATGCTC
GATGCACTGG TCGCCTACGG TTTCCCGGTC AGCAAGGAAC GTGCGGCAGT GAAGGGCGGG
GAAGGGCTGG TGCAATTCCA CGCCGCCATC GGCGCCAAGC GCGACAGCCT GCCGTTCGAT
ATCGATGGCG TGGTCTACAA GGTCAACTCG CTGGCACTGC AGCGCGAGCT GGGCTTTCGC
ACGCGCGAGC CGCGCTGGGC GGTGGCGCAC AAGTACCCGG CGCAGGAGGC GCTGACCACG
GTCGAGTCGA TCGGCGTGCA GGTCGGCCGC ACCGGGGCCA TCACGCCGGT GGCGCGTCTG
GTGCCGGTGT TCGTCGGCGG CGTGACGGTC ACCAACGCGA CCCTGCACAA CGAAGACGAA
GTCCGCCGCA AGGACGTGCG CGTGGGCGAC ACCGTGATCG TGCGCCGCGC CGGCGACGTG
ATCCCCGAGG TGGTGGCCGT GGTGCTGGAG CGCCGCCCGA TGGAAGACGT GCCGGGCAGC
GATCTGTTCA ACCCCACGCA GCAGCCCAAG CATCCGCCGT TCGAACTGCC CAGGAGTTGC
CCGGTCTGCG GCTCGCACGT GGTGCGCGAA GAGGGCGAGG CGGTGGCGCG CTGCTCGGGC
GGCCTGTTCT GCTCGGCGCA GCGCAAGGAG GCGATCCGCC ATTTCGCCGG CCGCCGCATG
ATGGACATCG AAGGCCTGGG CGAGCGCTAC ATCGACAACC TCGTCGAGCT GGAATACGTG
CACGGCATCG CCGACCTGTA CCGGCTCACG CTCGACGATT TCCTCGAAAT GAAGCGCCGC
GCCGACGAGC GCGACGGCGT GACCCCGGAG ACCGTGGCCG CCGGCAAGAT CGCCACCAAG
TGGGCCGAGA ACCTGCTGGA CGGCATCCGG GCCAGCAAGA CCCCGCCGCT GGCGCGCTTC
CTGTTCGCGA TGGGCATCCG CCATGTCGGC GAATCGACGG CCAAGACGCT GGCCGACTGG
CTGGGCAGCC TGGCGATAGT CCGCCGCGCG CCGGCGCCGC TGCTGCTGAC CTTGCCCGAC
GTGGGGGCGA CCGTCGCCGA GGCCATCGCC GATTTCTTTG CCGAGCCGAA GAACCAGCAG
GCGCTCGACG CCCTGCTCAC CGCCGGCGTG GCGCCCCAGG GCGAGCACCC GCCCAGCGCG
AAGCTGCGCG ACCAACTGGA GCCCGCCGAA CTGTACGCCG CGCTCGGCGT GCCCAAGCTG
ACGGCCATCC GCAGCAAGCA GCTGGCGACG CTGGTGCCGT CGCTCGCGCA ACTGGCCAAC
GTCGACACCG CGCAGCTGGA AGGCCTGCCG GCGGACGTGG CGGCGTCGCT GCTGGCCTGG
CTGGATGCCG ACGACCATCG CACCCGGCTG GGGACGCTGG ACGCGCTGCG CGCCGAACTG
CTTGCCGCCA TGCCGGCCGG GGCCGCCGAG GAAGGCGCGC TGAGCGGCAA GACCGTGGTG
CTGACCGGCA CGCTGCCCAC CCTGAGCCGC GACGAGGCCA AGGCCATGCT GGAGGCGGCC
GGCGCCAAGG TGTCCGGCTC GGTGTCGAAG AAGACCGACT ACGTTGTGGC TGGCGTTGAG
GCGGGCAGCA AGCTCGCCCG CGCGCAGGAG CTGGGCGTGC GGGTTCTGGA CGAAGCCGGT
ATGCTCGCGC TGTTGCAGAA CCCGCCGGGA GATTCCGCGT GA
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| Protein sequence | MSKTEHPASG ASPETRAAAL RATLNRYAHE YYVLDQPSVP DAEYDRLYRE LEALEAEHPE
LRTPDSPTLR VGGAVLPEFA PVRHVVPMLS IRTETDTTAG GALDFDASVR RELGLAESDP
PVEYAAELKF DGLAINLRYE KGFLVQAATR GDGATGEDVT QNIRTIRQIP LGLRPVGGAV
PDVLEVRGEV YMRRDDFERL NARQRERGDK TFVNPRNTAA GAVRQLDPKM AAERPLSFFA
YGLGEAAGWS GMPDTHSGML DALVAYGFPV SKERAAVKGG EGLVQFHAAI GAKRDSLPFD
IDGVVYKVNS LALQRELGFR TREPRWAVAH KYPAQEALTT VESIGVQVGR TGAITPVARL
VPVFVGGVTV TNATLHNEDE VRRKDVRVGD TVIVRRAGDV IPEVVAVVLE RRPMEDVPGS
DLFNPTQQPK HPPFELPRSC PVCGSHVVRE EGEAVARCSG GLFCSAQRKE AIRHFAGRRM
MDIEGLGERY IDNLVELEYV HGIADLYRLT LDDFLEMKRR ADERDGVTPE TVAAGKIATK
WAENLLDGIR ASKTPPLARF LFAMGIRHVG ESTAKTLADW LGSLAIVRRA PAPLLLTLPD
VGATVAEAIA DFFAEPKNQQ ALDALLTAGV APQGEHPPSA KLRDQLEPAE LYAALGVPKL
TAIRSKQLAT LVPSLAQLAN VDTAQLEGLP ADVAASLLAW LDADDHRTRL GTLDALRAEL
LAAMPAGAAE EGALSGKTVV LTGTLPTLSR DEAKAMLEAA GAKVSGSVSK KTDYVVAGVE
AGSKLARAQE LGVRVLDEAG MLALLQNPPG DSA
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