Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1326 |
Symbol | |
ID | 1220150 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1411206 |
End bp | 1412447 |
Gene Length | 1242 bp |
Protein Length | 413 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637237704 |
Product | aminotransferase AlaT |
Protein accession | NP_519447 |
Protein GI | 17546045 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0763036 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAAACGA TCCAGAAATC CGCCAAGCTC AACAACGTCT GCTATGACAT CCGCGGCCCC GTGCTGGAGA AGGCCAAGCA GATGGAGGAA GAGGGCCACC AGATCATCAA GCTGAACATC GGCAACCTGG CCCCGTTCGG CTTCGATGCC CCGGAAGAGA TCCAGCAGGA CATGATCCGC AACCTGCCCA ACTCGGCCGG CTACTCGGAT TCCAAGGGCA TCTTCGCGGC GCGCAAGGCG GTGATGCACT ATACGCAGCA GCAGGGCATC AAGAACGTCA CGCTGGACGA CATCTACCTG GGCAACGGCG CCTCCGAGCT GATCGCGCTG GCCACCAACG CGCTGCTCGA CGCCGGCGAC GAACTGCTGC TGCCCGCACC CGATTACCCG CTGTGGACCG CCATGACCAG CCTGTCGGGC GGCACGCCGG TGCATTACCT GTGCGACGAG TCCAACGGCT GGATGCCCGA CCTGGACGAC ATCCGCGCCA AGATCACGCC CAACACCAAG GGCATCGTCG TCATCAACCC GAACAATCCG ACCGGTGCGC TGTATTCGGA CGCGCTGCTG CACGACATCA TCGCCATCGC ACGCGAGCAC GGGCTGGTGA TCTTTGCCGA CGAGGTGTAC GACAAGGTGC TGTTCGACGA CAATCGGCAC ACCGCGATGG CCTCGCTGTC GGAGGATGTG CTGACCGTCA CGTTCAACAG CCTGTCCAAG AGCTACCGCT CGTGCGGCTA CCGCGCGGGC TGGATGGTGG TGTCGGGCGA CAAGCGTCCG GCCAAGGACT ACATCGAAGG CCTGAACATG CTGTCGTCGA TGCGCCTGTG CGCCAATGTG CCGGGGCAGT GGGCGATCCA GACGGCGCTG GGCGGCTATC AGAGCATCAA CGACCTGGTG GCGCCGGGCG GCCGCATGCG CCGCCAGCGC GACCTGGCCT ACGAACTGAT CACCGCCATT CCCGGCGTGA GCTGCGTCAA GCCGAAGGCG GCGCTGTACA TGTTCCCGCG CCTGGATCCG TCGGTGTACC CGATCGACGA CGATCAGACC TTCATTCGCC AACTGCTGGA GGAAGAGCGC GTGCTGCTGG TGCAGGGCAC GGGCTTCAAC TGGCATTCGC CGGACCACTT CCGCATCGTC TTCCTGCCGC ACGAGGACGA CCTGCGCGAG GCCATCGGCC GAATTGCGCG CTTCCTGGAG CGGTACCGTC AGCGTCACGG TACTGGCATC CGGGCCGCCT GA
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Protein sequence | MKTIQKSAKL NNVCYDIRGP VLEKAKQMEE EGHQIIKLNI GNLAPFGFDA PEEIQQDMIR NLPNSAGYSD SKGIFAARKA VMHYTQQQGI KNVTLDDIYL GNGASELIAL ATNALLDAGD ELLLPAPDYP LWTAMTSLSG GTPVHYLCDE SNGWMPDLDD IRAKITPNTK GIVVINPNNP TGALYSDALL HDIIAIAREH GLVIFADEVY DKVLFDDNRH TAMASLSEDV LTVTFNSLSK SYRSCGYRAG WMVVSGDKRP AKDYIEGLNM LSSMRLCANV PGQWAIQTAL GGYQSINDLV APGGRMRRQR DLAYELITAI PGVSCVKPKA ALYMFPRLDP SVYPIDDDQT FIRQLLEEER VLLVQGTGFN WHSPDHFRIV FLPHEDDLRE AIGRIARFLE RYRQRHGTGI RAA
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