| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1321 |
|---|
| Symbol | pmrF |
|---|
| ID | 1220145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 1406145 |
|---|
| End bp | 1407143 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637237699 |
|---|
| Product | putative polymixin resistance glycosyltransferase transmembrane protein |
|---|
| Protein accession | NP_519442 |
|---|
| Protein GI | 17546040 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0463] Glycosyltransferases involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.689338 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACAC CCGCTCTCTC GGTCGTCATT CCCGTCTACA ACGAGGAAGA GGGGCTCGCC
GCCCTGTTCG CGCGCCTGTA TCCCGCCCTC GATGCACTCG GCATCTCGTA CGAGGTCGTG
TTCATCAACG ACGGCAGCCG GGACCGCTCC GCCGCCATGC TCGCCGAGCA GTTCCGCGCG
CGGCCCGACA CCACCCGCGT GGTGCTGTTC AACGGCAACT ACGGCCAGCA CATGGCCATC
CTGGCCGGCT TCGAGCACGC CCGCGGCGAG CGCGTCATCA CGCTGGACGC CGACCTGCAG
AACCCGCCCG AAGAGATCGG CCGCCTGGTC GCCAAGCTCG ACGAAGGCTA CGACTACGTC
GGCACCATCC GCCGCAACCG GCAGGACACC TGGTTCCGCC GCACCGCGTC GCGCGCCATG
AACTCGCTGC GCGAGCGCAT CACGCACATC AAGATGACCG ACCAGGGCTG CATGCTGCGC
GCCTACAGCC GCCCCATCGT CGACACCATC AACCGCTGCC GCGAAGTCAA CACCTTCATC
CCGGCGCTGG GCTACACCTT CGCCAAGAAC CCGACCGAGA TCGAAGTCGA CCACGAAGAG
CGCTTCGCGG GCGAATCCAA GTACTCGCTC TACAAGCTGA TCCGCCTGAA CTTCGACCTG
GTGACGGGCT TCTCGGTGGT GCCGCTGCAG TGGTTCTCGG CGATCGGCAT GCTGCTGTCG
CTCGCCTCGG CGGTGCTGTT CGTCCTGCTG GTCGTGCGCC GCTTCGTCCT TGGCGCGGAA
GTCCAGGGCG TGTTCACGCT GTTTGCCATC ACGTTCTTCC TGATGGGGGT GCTGCTGTTC
GGCATCGGGC TGCTGGGCGA GTACATCGGC CGGATCTACC AGCAGGTGCG CGAGCGTCCG
CGCTACCTGG TGCAGGGCGT GCTGGAAGAC GCGCCCAACC TGCACGAGGC CGGCGCCGCC
GACCTGAACG TGTCCAAGGC GCAGCGGGGC GCGGCATGA
|
|---|
| Protein sequence | MKTPALSVVI PVYNEEEGLA ALFARLYPAL DALGISYEVV FINDGSRDRS AAMLAEQFRA
RPDTTRVVLF NGNYGQHMAI LAGFEHARGE RVITLDADLQ NPPEEIGRLV AKLDEGYDYV
GTIRRNRQDT WFRRTASRAM NSLRERITHI KMTDQGCMLR AYSRPIVDTI NRCREVNTFI
PALGYTFAKN PTEIEVDHEE RFAGESKYSL YKLIRLNFDL VTGFSVVPLQ WFSAIGMLLS
LASAVLFVLL VVRRFVLGAE VQGVFTLFAI TFFLMGVLLF GIGLLGEYIG RIYQQVRERP
RYLVQGVLED APNLHEAGAA DLNVSKAQRG AA
|
|---|
| |