| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1302 |
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| Symbol | pepV |
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| ID | 1220126 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1388632 |
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| End bp | 1390359 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637237680 |
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| Product | hypothetical protein |
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| Protein accession | NP_519423 |
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| Protein GI | 17546021 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01887] dipeptidase, putative |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.526816 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACGTA CCACCTGCTC CGGTCTGTGC GCCTTGGTGT TGGGGCTGCC GCTGGCCATG
GCCGCCGGTG CCGCCACGCT CAAGAAGCCC GAGCTGGATG CGCTGGCCCT GTCAGAGCAG
TCGAGCGCCG CATCGTCCGA CCTGCCGGAT TTTCTAGAGG CCGCTGCCAA GGCCGATCCC
GTGGTCGCCG GCAGTGTTGC CGCCTACCGG CGGCAGTCGC CGCTCACCGG CGATGATCTG
GTCAACATCG GCCGGCTGCT GGGCCTGTAC AACCGCCTGC ACAACCAGCA GGCGGCGATC
GCCTCGATCG AGAAGATGGT CGCGCTGCCT ACGGTGCGCG ACGACAGGAT TCCGCAGTAC
GAAAGCCCCG CCATCGTTGC ATTCGGCAAG CTGGTTGAAG GCATGGCACG CGATTTCGGC
CTGCGCTACC GCAATGTCGA TCACCGGGTC TTCGAAATCA CGCTGCCCGG CACCGGTCAG
GACGAATTCG GCATTCTGAC GCACGCCGAT GTGGTGCCCG CGCGTGCCGA GGAGTGGGTG
CTGGACGACG GTACGCGGCT CGATCCGTTC AAGGTGACGC GTGTTGGCAA CCTGCTGTAT
GGGCGCGGCA CCATCGACGA CAAGGGGTCG GTTGCCGCCG CGCTGTATGC GATGAAGACC
GTCAAGGACA GCGGTGTGCC GCTCGCGCGG ACGATCCGGC TCATGATCGA CACCACTGAG
GAAACCGGTG GCGACGGCAT GAAGTACTAC CGCGAGCGCA CCCGGCTGCC CGCGTACAAC
ATCGTGCTCG ACAGCAAGTA TCCCGCCGTG GTGGCCGAGA AGGGCTCGGG TGCGCTGAAA
GTGGCGTTCC CCGCGTTGCC GGTGGACATG AGCCGTCTCG CTATCGTGGC GATGACGGGC
GCCGCTTCGG CCAACGCCGT GCCCCAGACC GCCACCGTAA CGCTCAAGGG CGGTGACCTG
GGCACAGCGG CTGCCGCATT GGAGGCGAAG CGCGATGCCT TCGTCCGCGG CCTCGCCGCG
CAAGGCGCGT TCTCCATTGA TGTCACGCGC AGCGCAGACA GTGTCATCGT CAAGGTGACC
GGTGCGTCCG CGCACGGCTC ACGGCCGGAG GAGGGCGTCA ACCCGCTGCC GCGCCTGGTG
CTGTTCCTGC GCGCGGCCGG CCTCGACCTG GCCGACAACG CTTATGCCCA TGCCGTGCGC
TACCTGACCG ATCTGTACGG GACGGACTAC CTTGGCAATC CGATGGGTGT CGCCTACAAG
GACGACTTCA TGGGGCCGCT GACGATGTCG CCCAATGCGA TCGGCGACAG GAACGGCCGC
GTCGAAGTGG CCGTCAACGT GCGCATGCCA CGCGGCAAGA CGCCCGATGC CCTGCGCGGT
GAGATTGCCG GCAGGATCAA CGCCTGGGCC GGCGCCAGCC GCATCGCTGT GGAGATCAGC
CACGATCAGG GCAACTGGAT GGCGCGCGAC CCGAAGGGCG CATGGCTTGC AACGCTACTG
AACATCTATG GCGAGACCAC CGGCCTGGAT GCCAGGCCGG TGCCGACGGC TGGCAGCACC
GCGGCCAAGC TGATGCCCAA TGCCATCAAC TTCGGGCCGG CCATGCCGGG TAAGAAGCAC
ACGGCGCACA ACGCCAAGGA GTACAAGGAA GTGCCGGATC TCGACCTGGA CATGCAGATG
TTCACCGAGA TGCTGGTCCG TATCGGCAGC CTGCCGGCGA TGCAATAA
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| Protein sequence | MQRTTCSGLC ALVLGLPLAM AAGAATLKKP ELDALALSEQ SSAASSDLPD FLEAAAKADP
VVAGSVAAYR RQSPLTGDDL VNIGRLLGLY NRLHNQQAAI ASIEKMVALP TVRDDRIPQY
ESPAIVAFGK LVEGMARDFG LRYRNVDHRV FEITLPGTGQ DEFGILTHAD VVPARAEEWV
LDDGTRLDPF KVTRVGNLLY GRGTIDDKGS VAAALYAMKT VKDSGVPLAR TIRLMIDTTE
ETGGDGMKYY RERTRLPAYN IVLDSKYPAV VAEKGSGALK VAFPALPVDM SRLAIVAMTG
AASANAVPQT ATVTLKGGDL GTAAAALEAK RDAFVRGLAA QGAFSIDVTR SADSVIVKVT
GASAHGSRPE EGVNPLPRLV LFLRAAGLDL ADNAYAHAVR YLTDLYGTDY LGNPMGVAYK
DDFMGPLTMS PNAIGDRNGR VEVAVNVRMP RGKTPDALRG EIAGRINAWA GASRIAVEIS
HDQGNWMARD PKGAWLATLL NIYGETTGLD ARPVPTAGST AAKLMPNAIN FGPAMPGKKH
TAHNAKEYKE VPDLDLDMQM FTEMLVRIGS LPAMQ
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