Gene RSc1296 details

Gene Information

• Locus tag: RSc1296
• Symbol: typA
• ID: 1220119
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: +
• Start bp: 1381540
• End bp: 1383360
• Gene Length: 1821 bp
• Protein Length: 606 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637237673
• Product: GTP-binding elongation factor protein
• Protein accession: NP_519417
• Protein GI: 17546015
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.609673
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 17
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGCGCGC TTCGCAACAT CGCCATCATT GCCCACGTTG ACCACGGCAA GACCACGCTG 
GTCGACCAGC TCCTCCGCCA AGCCGGCACG TTCCGCGAGA ACGAGCAGAT CGCCGAGCGC 
GTGATGGACT CGAACGACAT CGAAAAAGAG CGCGGCATCA CGATCCTGGC CAAGAACTGC 
GCGGTCGAGT ACAACGGCAC GCACATCAAC ATCGTCGACA CCCCGGGCCA CGCCGACTTC 
GGCGGCGAAG TGGAGCGCGT GCTGTCGATG GTCGACGGCG TGCTGCTGCT GGTGGACGCG 
GTGGAAGGTC CGATGCCGCA GACGCGCTTC GTGACGCGCA AGGCACTGGC GCTGGGCCTG 
AAGCCCATCG TCGTGATCAA CAAGGTGGAC CGTCCGGGCG CCCGTCCGGA GTGGGTGATC 
AACCAGACCT TCGACCTGTT CGACAAGCTG GGCGCCAATG ATGATCAGCT CGATTTCCCG 
GTGGTGTACG CCTCGGGCCT GAACGGCTAT GCCGGCCTGA CCGACGACGT GCGCAGCGGC 
GACATGAAGC CGCTGTTCGA GACCATCCTC GACAAGGTGC CGCAGCGTAA CGACGACCCG 
AACGGCTCGT TCCAGCTGCA GATCATCTCG CTCGATTACT CGAGCTACGT CGGCAAGATC 
GGCGTGGGCC GCATCACGCG CGGCCGTGTG CGTCCGCTGC AAGACGTGGT GGTCAAGTTC 
GGCCCGGAAG GTGCCCCGAT CAAGGGCCGC GTCAACCAGG TGCTGAAGTT CCGTGGCCTG 
GAGCGCGAGC TGGTGCAGGA AGCGGAAGCC GGCGACATCG TGCTGATCAA CGGCATTGAT 
GAGCTGGGCA TCGGCTGCAC CGTGTGCGCG CCGGACGCGC AAGACGCCCT GCCGATGCTG 
AAGGTGGACG AGCCGACGCT GACCATGAAC TTCTGCGTCA ACACCTCGCC GCTGGCGGGC 
CGCGAAGGCA AGTTCGTCAC CAGCCGCCAG TTGCGCGACC GCCTGGACCG CGAGCTGAAG 
TCCAACGTGG CGCTGCGCGT GAAGGACACC GGCGACGACA CGATCTTCGA AGTGTCGGGC 
CGTGGCGAAC TGCACCTGAC CATCCTGGTG GAAAACATGC GCCGCGAGGG CTACGAGCTG 
GCCGTGTCGC GTCCGCGCGT GGTGTTCAAG GAAATCGACG GCGTGAAGCA CGAGCCGTTC 
GAGCGCCTGA CCGTGGACGT GGAAGACGGC CACCAGGGCG GCGTGATGGA AGAGCTCGGC 
CGCCGCAAGG GCGAGCTGCT CGACATGGCG TCGGACGGCA AGGGCCGGAC CCGCCTGGAA 
TACCGCATTC CGGCGCGCGG CCTGATCGGC TTCCAGGGTG AGTTCCTGAC GCTGACGCGC 
GGCACCGGCC TGATCAGCCA CATCTTCGAC GACTACTCGC CGGTCAAGGA AGGCGACCTG 
GGTGAGCGCC ACAACGGTGT GCTGATCTCG CAGGACGACG GCGCTGCCGT GGCCTACGCG 
CTGTGGAAGC TGCAGGATCG CGGCCGCATG TTCGTGTCGC CCGGCGATGC GCTGTACGAA 
GGCATGATCA TCGGCATCCA CAGCCGTGAC AACGACCTCG TCGTCAACCC GATCAAGGGC 
AAGCAGCTGA CCAACGTGCG TGCTTCGGGC ACCGATGAGG CCGTGCGCCT GGTGCCGCCG 
ATCCAGATGT CGCTGGAATA CGCGGTGGAA TTCATCGCCG ACGACGAACT GGTCGAGGTC 
ACGCCCAAGA GCATCCGTCT GCGCAAGCGT CACCTGAAGG AACACGAGCG CAAGCGCGCC 
TCGCGTGAAG AAGCGGTCTG A 

 

Protein sequence

MRALRNIAII AHVDHGKTTL VDQLLRQAGT FRENEQIAER VMDSNDIEKE RGITILAKNC 
AVEYNGTHIN IVDTPGHADF GGEVERVLSM VDGVLLLVDA VEGPMPQTRF VTRKALALGL 
KPIVVINKVD RPGARPEWVI NQTFDLFDKL GANDDQLDFP VVYASGLNGY AGLTDDVRSG 
DMKPLFETIL DKVPQRNDDP NGSFQLQIIS LDYSSYVGKI GVGRITRGRV RPLQDVVVKF 
GPEGAPIKGR VNQVLKFRGL ERELVQEAEA GDIVLINGID ELGIGCTVCA PDAQDALPML 
KVDEPTLTMN FCVNTSPLAG REGKFVTSRQ LRDRLDRELK SNVALRVKDT GDDTIFEVSG 
RGELHLTILV ENMRREGYEL AVSRPRVVFK EIDGVKHEPF ERLTVDVEDG HQGGVMEELG 
RRKGELLDMA SDGKGRTRLE YRIPARGLIG FQGEFLTLTR GTGLISHIFD DYSPVKEGDL 
GERHNGVLIS QDDGAAVAYA LWKLQDRGRM FVSPGDALYE GMIIGIHSRD NDLVVNPIKG 
KQLTNVRASG TDEAVRLVPP IQMSLEYAVE FIADDELVEV TPKSIRLRKR HLKEHERKRA 
SREEAV