| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1292 |
|---|
| Symbol | emrB |
|---|
| ID | 1220115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 1376307 |
|---|
| End bp | 1377863 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637237669 |
|---|
| Product | multidrug resistance B (translocase) transmembrane protein |
|---|
| Protein accession | NP_519413 |
|---|
| Protein GI | 17546011 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.453307 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACCG CCGCGCCCCG GCCGCTCCAG CCCCTGACCG GCGCCAAGCT GGCGATCGGT
ACGGTGGCGC TGTCGCTGGC CACCTTCATG AACGTGCTGG ATTCGTCCAT CGCCAACGTG
TCGATCCCGG CCATCTCGGG CGACCTCGGC GTCGCGCCGA ACCAGGGCAC GTGGGTCATC
ACCTCGTTCG CCGTGGCCAA CGCCATCTCG GTGCCGCTCA CCGGGTGGCT GACGCAGCGC
TTCGGGCAGG TGCGCCTGTT CGTCACGTCG ATCCTCCTGT TCGTGCTGTC GTCGTGGGCG
TGCGGGCTGG CGCCCAACAT GGGCACGCTG ATCGCCGCGC GGATCCTCCA GGGCGCGGTG
GCCGGCCCGA TGATCCCGCT GTCGCAATCG CTGCTGCTGT CCACGTATCC GCCGGCCAAG
AGCTCGATGG CGCTGGCGCT ATGGGGCATG ACCACGCTGG TCGCGCCGAT CATGGGGCCG
ATCTTCGGCG GCTGGATCTC GGACAACATG ACCTGGCCGT GGATCTTCTA TATCAACATC
CCGGTCGGCA TCCTGGCCGC CTATGCGACC TGGGTCATCT ATAAGGACCG CGAATCGCCC
ACGCGCGCGC TGCCGATCGA CCGCATCGGC CTGGCGCTGC TGGTGATCTG GGTCGGCTCG
CTGCAGCTGA TGCTCGATCG CGGCAAGGAG CTCGACTGGT TCAACTCGGC CGAGATCGTC
ACGCTGACCG TGGTGGCCGT GGTGGGCTTC GCCTTCTTCC TCGTGTGGGA ACTGACCGAA
GACCACCCGG TGGTGGACCT GACGCTGTTC AAGGGCCGCA ACTTCAGCGC CGGCGTGGTC
GCCATCTCGG TGGCGTACGG GCTGTTCTTC GGCAACCTCG TCATCCTGCC GCTGTGGCTG
CAGACCATCG TCGGCTACAC GGCCACCGAT GCCGGGCTGG TGATGGCGCC GGTGGGCATC
TTCGCCATCC TGCTCTCGCC GGTGATCGGC AAGAACCTGC CGAAGATGGA CGCGCGCTGG
GTCGCGACCA CGGCCTTCAT CACCTTCGCG CTGGTGTTCT GGATGCGCTC GCGCTTCACG
ATCCAGGTCG ACACCTGGAC GCTGATGGTG CCGACGCTGA TCCAGGGCGC GGCCATGGCG
ATGTTCTTCA TCCCGCTCAC GTCGATCATC CTGTCGGGCC TGCGGCCCGA GCGGATTCCG
GCCGCATCGG GCCTGTCGAA CTTCGTGCGG ATCATGTTCG GCGGCATCGG CGCGTCGATC
TCGACCACGG TGTGGGACAA CCGCTCCGCC CTGCATCACG CGCAACTGGT CGAGCGCGCC
AACCCGTACA ACCCGGCCTA CGCCTCGTCG CTCGGCGACT ACACGCAGAT GGGCATGCCC
AGCCTGCAGG CCAACGGCGC GATCGAGCGG ATCATCTCGC AGCAGGCCGC AATGATGGGC
GCCAATGACA TCTTCTGGAT TTCGGCGGTG CTGTTCATCG TGCTGATCGC CCTGATCTGG
CTGACGCGAC CCGCGAAGTC GGCGGGCGGC GCGGAAGCGG CGGCGGGCGC GCACTGA
|
|---|
| Protein sequence | MTTAAPRPLQ PLTGAKLAIG TVALSLATFM NVLDSSIANV SIPAISGDLG VAPNQGTWVI
TSFAVANAIS VPLTGWLTQR FGQVRLFVTS ILLFVLSSWA CGLAPNMGTL IAARILQGAV
AGPMIPLSQS LLLSTYPPAK SSMALALWGM TTLVAPIMGP IFGGWISDNM TWPWIFYINI
PVGILAAYAT WVIYKDRESP TRALPIDRIG LALLVIWVGS LQLMLDRGKE LDWFNSAEIV
TLTVVAVVGF AFFLVWELTE DHPVVDLTLF KGRNFSAGVV AISVAYGLFF GNLVILPLWL
QTIVGYTATD AGLVMAPVGI FAILLSPVIG KNLPKMDARW VATTAFITFA LVFWMRSRFT
IQVDTWTLMV PTLIQGAAMA MFFIPLTSII LSGLRPERIP AASGLSNFVR IMFGGIGASI
STTVWDNRSA LHHAQLVERA NPYNPAYASS LGDYTQMGMP SLQANGAIER IISQQAAMMG
ANDIFWISAV LFIVLIALIW LTRPAKSAGG AEAAAGAH
|
|---|
| |