| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1251 |
|---|
| Symbol | hrpA |
|---|
| ID | 1220074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1327012 |
|---|
| End bp | 1331007 |
|---|
| Gene Length | 3996 bp |
|---|
| Protein Length | 1331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637237628 |
|---|
| Product | ATP-dependent RNA helicase protein |
|---|
| Protein accession | NP_519372 |
|---|
| Protein GI | 17545970 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.301256 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGATT CCCACGTCTC GCCGCCGTCG GCGGCACCCT CCCAGTCCTC CCCGAACGAC
GCCAGCCGGC CCGCGCGCCA GGCGGGCCAG GCCGACGCCG GCGGCCGTCG CCCGCGCCGG
CAGAAGCCGA CGCCGGAAGC GCTCGCCGCC GCGCTGGAAG CCCGCCGCGC GCGCGCCAAC
GCGGTGCCGC CGATCAGCTT TCCCGAAGCG TTGCCGGTCT CGGCCCGGCG CGACGAGATC
GCCCGGGCCG TCGCCGCGCA CCAGGTGGTG ATCGTCAGCG GCGAGACCGG CTCGGGCAAG
ACCACGCAGT TGCCCAAGAT CTGCCTGTCG ATCGGGCGCG GCATCGGCGC GGGCGGCACC
GGGCTGATCG GCCATACGCA GCCGCGGCGC ATCGCCGCCA CCTCCACCGC CAAGCGCATC
GCCCAGGAGA TCGGCTCGCC GCTGGGCGAG CACGTCGGCT ACCAGGTGCG CTTCAACGAC
ACGCTGTCGG CCGGCGCCTC GGTCAAGCTG ATGACCGACG GTATCCTGCT GGCCGAGACG
CAGAACGATC CGCTGCTGCG CGGCTACGAC ACGATCATCA TCGACGAGGC GCACGAGCGC
AGCCTCAACA TCGATTTCCT GCTCGGCTAC CTCAAGCAGC TGCTGCCGCG CCGGCCCGAC
CTGAAGGTCA TCATCACCTC GGCCACCATC GACGCGCAGC GCTTTGCCGA GCACTTCGCC
GGGCCCAAGG GGCCCGCGCC GGTCATCGAA GTGAGCGGCC GGCTGTATCC GGTCGAAGTG
CGCTACCGCC CCGTGCAGCG TGACGAGAAG GACAAGGAGC GCGACCTCTA CGACGGCATC
GTCGACGCGG TCGACGAGCT CGCGCGCGAA GGCGCCGGCG ATGTGCTGAT CTTCCTGCCG
GGCGAACGCG AGATCCGCGA GGCGGCCGAG GCGCTGCGCA AGCACCACCC GGCGCACACC
GAGATCCTGC CGCTGTTCGC GCGGCTGTCG GTGCAGGAGC AGGAGCGGGT GTTCCGCCCG
TCCAACGCGC GCCGCATCGT GCTGGCCACC AACGTGGCCG AGACCTCGCT GACGGTGCCG
GGCATCCGCT ACGTGGTCGA TGCGGGGCTG GCGCGCGTCA AGCGCTATTC GTACCGCAAC
AAGGTCGAGC AGCTGCAGAT CGAGCCGGTT TCGCAGGCCG CCGCCAACCA GCGCGCGGGC
CGCTGCGGCC GGGTGGCCGA CGGCGTGTGC ATCCGCCTGT ATGAAGAGGC GGACTTCATC
GCGCGCCCGC GCTTTACCGA TCCGGAAATC CTGCGTTCGT CGCTGGCCGC CGTCATTCTG
CGCATGAAGG CACTGCGGCT GACGGATGTG GAGCAGTTCC CCTTCATCGA GCCGCCGCTG
GGCCGTGCGA TTGCCGATGG CTACCAGCTC CTGCAGGAGC TGGGCGCGGT CGACGATGAG
AACGCGCTGA CGCCGCTGGG CAAGCAGGTG GCCCGCCTGC CGCTGGACCC GCGCGTGGCG
CGCATGATCC TGGCCGGCCG CGACCACCAG TGCCTGCGCG AGATGCTCAT CATCGCCAGC
GCCCTGTCCG TGCAAGACCC GCGCGACCGC CCGCAGGAAC TGCAGCAGCA GGCCGACCAG
GCGCACCGTC AGTTTGCCGA CGAGAAATCC GAATTCCTCG GCTGGGTCAA GCTGTGGAAG
TGGTTTGAAG AGGCGGTCGC GCACAAGAAG TCGAACAAGC AGTTGCAGGA CCAGTGCCGC
GCGCACTTCC TGTCGCACCT GCGGCTGCGC GAGTGGCGCG ACGTGCATTC GCAACTGCAC
ACCACGGTGG CCGAGCAAGG CTGGAAGCTC AACGAATCCG AGCCGACCTA CGAACAGCTG
CACCTGGCGT TGCTGACGGG CCTGCTCGGC AACATCGGCG TGCGCATCGA AGAAGCCGAT
GGCAAGGGGC GCGAATACCT CGGCGCGCGC GGCATCAAGT TCTTCCTGTG GCCGGGTTCG
GCCATCGCGC GCAAGGCCGG CAAGTGGATG GTGGCCGGCG AGCTGATCGA AACCAGCCGC
CTGTTCGGCC GCACGCTGGC GCGCATCGAG CCTGAATGGG TGGAGAAGGT CGGCGCGCAC
CTGTTGAAGG TGTCGTGGAG CGACCCGCAC TGGGAAAAGA AGGCCGGCCA GGTGATGGCC
TTCGAGCGCG GCACGCTCTA CGGCCTGCCG GTCTACCAGC AGCGCCGCGT GCATTTCGGG
CCGATGCAGC CCAGGGAGGC GCGCGAGCTG TTCATCCGCC GCGCGCTGGT CGACGGCGAG
TTCGAGACGC GCCTGCCGTT CTTCGCGCAC AACCAGCGTC TGGTGCGCGA GATCGAGAAC
CTCGAGCACA AGTCGCGCCG CCAGGACGTG CTGGTCGACG ACGAACTGAT CCACGCCTTC
TACGACAGCC AGATCCCGGC CGACATCCAC AACACCGTCG CCTTCGAGGG CTGGTACGCC
GAGGCCGCCA AGGCCAGCCA GAAGCTGCTG TACCTGAACC GCGACGACCT GATGCGCCAC
GAGGCGGCCG GCATCACCAC CGACCTGTTC CCCAAGACGC TGCCGATCGC CGGCATCGAC
ATGGGCCTCA CGTATCACTT CGAGCCCGGC AGCCCGCGCG ACGGCGTGAC GCTGACGGTG
CCGCTCTACG CGCTGAACCA GGTGCCCGCG CAGCGCGCCG AATGGCTGGT GCCCGGCATG
CTCAAGGAGA AGGCGCACCT GCTGCTCAAG AGCCTGCCGC AGAAGCTGCG CCGCCACTGC
GTGCCGCTGC CCGACTATGC CGCCGGCTTT GTGTCGCGCG TAAGGCTGGG TGACGGCGAC
CTGCTCGACC GCCTGATCGC CGACGTGCGC GAGCAGACCG GCACGCCGCT CAAGCGCGCC
GACTTCAAGC TGGAAACGCT GCCCGCGCAT CACTTCATGA ACTTCAAGGT GATTGACGAG
CACGGCCGCC AGCTCGACAT GGGCCGCAAC CTGGCCCAGC TGCGCGCCGA ACTCGGCGGG
CGGGCGCAGC AGACCTTCCA GTCGATCGCC GCCAAGGACG CGGCGGTGGC CGGCGCGCCG
GGCGATGGCG CCGGCGCCAG GCCGGGCAAG GGCGGCAAGC CGGACGCCCC GGCCAACCCC
GCGCTGTACT CGGGCCTGAC CACCTGGAAC TTCGGCGAGC TGCCCGAACT GCTGGAAGTC
CGCAAGGGCA GCCAGACGCT GTTCGGCTAC CCGGCGCTGG TCGACGGCGG CGACCACTGC
GACGTGGAAG TCTTCGACGA CCCGGCCGAG GCCGCGCGCA TCCACCGCCT GGGTTTGCGC
CGTCTGTTTG CGCTGCAGCT GCGCGAGCCG CTGAAGTACC TGGAAAAGAA TATTCCTGGC
CTGTCGCAGA TGGCGATCCA GTTCATGACC CTGGGCGCGC AGGACGAACT GCGCAACCAG
ATCCTGGACG CCGCGCTCGA CCGCGCCTGC CTGCAGGACC CGCTACCCGC CGACGACGCC
GGCTTCGGCG CCCGCAAGGA CGAGGGCCGC ACGCGCCTGA CGCTGCTGGC GCAGGAGATC
GCCCGGCTGG CCGGCGCGAT CCTGGCCGAA TACGCCCAGC TGCCGCGCAA GCTGCAGATC
GCCAAACCGT TCGGCGCCGC GTATGCCGAC ATCGATGCGC AACTGAAGGC GCTGATGCAC
AAGCGCTTCA TCGAGGCGAC GCCCTACGCC CAGCTCGCGC ACTTCCCGCG CTACCTGAAG
GGCATCGCCA TGCGCATCGA CAAGCTCAAG GCCGATCCGA CGCGCGACAC CCAGCGCATG
CAGGAGATGG CGCCGCTGTT CCAGCAGTAC CAGCGCGCCG AGAAGCAGCT GCGTGTGCAG
GGGCAGGGTC GAGCTGCGGC GGGTGACCCG CGCATGGAGG AATTCCGCTG GATGCTGGAG
GAGCTGCGCA TCGCGCTGTT CGCGCAGGAG TTGCGCACGC CGGTGCCGAT GTCGGTGAAG
CGGCTGCAGA AAGTGTGGGA GTCGATGCAG CGATAG
|
|---|
| Protein sequence | MSDSHVSPPS AAPSQSSPND ASRPARQAGQ ADAGGRRPRR QKPTPEALAA ALEARRARAN
AVPPISFPEA LPVSARRDEI ARAVAAHQVV IVSGETGSGK TTQLPKICLS IGRGIGAGGT
GLIGHTQPRR IAATSTAKRI AQEIGSPLGE HVGYQVRFND TLSAGASVKL MTDGILLAET
QNDPLLRGYD TIIIDEAHER SLNIDFLLGY LKQLLPRRPD LKVIITSATI DAQRFAEHFA
GPKGPAPVIE VSGRLYPVEV RYRPVQRDEK DKERDLYDGI VDAVDELARE GAGDVLIFLP
GEREIREAAE ALRKHHPAHT EILPLFARLS VQEQERVFRP SNARRIVLAT NVAETSLTVP
GIRYVVDAGL ARVKRYSYRN KVEQLQIEPV SQAAANQRAG RCGRVADGVC IRLYEEADFI
ARPRFTDPEI LRSSLAAVIL RMKALRLTDV EQFPFIEPPL GRAIADGYQL LQELGAVDDE
NALTPLGKQV ARLPLDPRVA RMILAGRDHQ CLREMLIIAS ALSVQDPRDR PQELQQQADQ
AHRQFADEKS EFLGWVKLWK WFEEAVAHKK SNKQLQDQCR AHFLSHLRLR EWRDVHSQLH
TTVAEQGWKL NESEPTYEQL HLALLTGLLG NIGVRIEEAD GKGREYLGAR GIKFFLWPGS
AIARKAGKWM VAGELIETSR LFGRTLARIE PEWVEKVGAH LLKVSWSDPH WEKKAGQVMA
FERGTLYGLP VYQQRRVHFG PMQPREAREL FIRRALVDGE FETRLPFFAH NQRLVREIEN
LEHKSRRQDV LVDDELIHAF YDSQIPADIH NTVAFEGWYA EAAKASQKLL YLNRDDLMRH
EAAGITTDLF PKTLPIAGID MGLTYHFEPG SPRDGVTLTV PLYALNQVPA QRAEWLVPGM
LKEKAHLLLK SLPQKLRRHC VPLPDYAAGF VSRVRLGDGD LLDRLIADVR EQTGTPLKRA
DFKLETLPAH HFMNFKVIDE HGRQLDMGRN LAQLRAELGG RAQQTFQSIA AKDAAVAGAP
GDGAGARPGK GGKPDAPANP ALYSGLTTWN FGELPELLEV RKGSQTLFGY PALVDGGDHC
DVEVFDDPAE AARIHRLGLR RLFALQLREP LKYLEKNIPG LSQMAIQFMT LGAQDELRNQ
ILDAALDRAC LQDPLPADDA GFGARKDEGR TRLTLLAQEI ARLAGAILAE YAQLPRKLQI
AKPFGAAYAD IDAQLKALMH KRFIEATPYA QLAHFPRYLK GIAMRIDKLK ADPTRDTQRM
QEMAPLFQQY QRAEKQLRVQ GQGRAAAGDP RMEEFRWMLE ELRIALFAQE LRTPVPMSVK
RLQKVWESMQ R
|
|---|
| |