Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1223 |
Symbol | |
ID | 1220045 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1293153 |
End bp | 1294067 |
Gene Length | 915 bp |
Protein Length | 304 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637237599 |
Product | putative serine protease transmembrane protein |
Protein accession | NP_519344 |
Protein GI | 17545942 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
TIGRFAM ID | [TIGR01932] HflC protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00070103 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATCGTC TGATTTCCGC CCTCGTGGCG CTGGTGATTG CCCTGGCGGT CCTGTCGTCG GTGGTGTTCG TGGTGGACCA GCGGCAGTAC GCCGTGGTGT TCGCCTTCGG TGAGATCAAG CAGGTCATCA AGGAGCCGGG GCTGCACTTC AAGCTGCCGC CGCCGCTGCA GAACGTGATC TTCATGGACA AGCGCCTGAT GACCATCGAC GTGGCTGGTG CCGACCGCTT CATCACGGCC GAGAAGAAGA ACCTGCTGGT CGACTGGTTC GTCAAATGGC GGGTTTCCGA TCCGCGCCTG TTCTACGTGA GCTTCAAGGG CGACAACCGC CTCGCGCAGG ACAGCATGAC GCAGAAGATC AACTCCATCG CTCGCGACGA ATTCGCGCGC CGCACCGTCT CCGACGTGGT CTCGACCGAC CGCGAGGCGG TGATGCAGAG CATCCTCAAG GGCGTGCAGG AATACGGCAG GTCGGTTGGC GTCGACATCA TCGACGTGCG TCTCAAGCGC GTCGATCTGC TGGCCAGCGT GACCGAGTCT GTCTACCGCC GCATGGAGGC CGAGCGAAAG CGCGTGGCCA ACGAACTGCG CTCGACCGGC GCCGCCGAAG GCGAGAAGAT CCGCGCCGAC GCCGACCGCC AGCGCGAGGT GGTGCTGGCC GATGCCTACC GCGAAGCCCA GAAGATCAAG GGTGAGGGCG ATGCCCGCGC CGCCGACATC TATGCCGACG CGTTCGGCCG CGATCCGCAG TTTGCCGCGT TCTGGCGCAG CATGGAGGCG TATCGCGCGT CGTTCCGCGA CCGCAAGGAC GTGATGGTGC TGCAGCCCGG CAGCGATTTC TTCAAGTTCA TGCGCGGCCC CAACGGCGGC GGCCAGTCCG TCGCACCGGC TGCCCAGGCT GGGCGCCATC GCTAG
|
Protein sequence | MNRLISALVA LVIALAVLSS VVFVVDQRQY AVVFAFGEIK QVIKEPGLHF KLPPPLQNVI FMDKRLMTID VAGADRFITA EKKNLLVDWF VKWRVSDPRL FYVSFKGDNR LAQDSMTQKI NSIARDEFAR RTVSDVVSTD REAVMQSILK GVQEYGRSVG VDIIDVRLKR VDLLASVTES VYRRMEAERK RVANELRSTG AAEGEKIRAD ADRQREVVLA DAYREAQKIK GEGDARAADI YADAFGRDPQ FAAFWRSMEA YRASFRDRKD VMVLQPGSDF FKFMRGPNGG GQSVAPAAQA GRHR
|
| |