| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1223 |
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| Symbol | |
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| ID | 1220045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1293153 |
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| End bp | 1294067 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637237599 |
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| Product | putative serine protease transmembrane protein |
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| Protein accession | NP_519344 |
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| Protein GI | 17545942 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
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| TIGRFAM ID | [TIGR01932] HflC protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00070103 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCGTC TGATTTCCGC CCTCGTGGCG CTGGTGATTG CCCTGGCGGT CCTGTCGTCG
GTGGTGTTCG TGGTGGACCA GCGGCAGTAC GCCGTGGTGT TCGCCTTCGG TGAGATCAAG
CAGGTCATCA AGGAGCCGGG GCTGCACTTC AAGCTGCCGC CGCCGCTGCA GAACGTGATC
TTCATGGACA AGCGCCTGAT GACCATCGAC GTGGCTGGTG CCGACCGCTT CATCACGGCC
GAGAAGAAGA ACCTGCTGGT CGACTGGTTC GTCAAATGGC GGGTTTCCGA TCCGCGCCTG
TTCTACGTGA GCTTCAAGGG CGACAACCGC CTCGCGCAGG ACAGCATGAC GCAGAAGATC
AACTCCATCG CTCGCGACGA ATTCGCGCGC CGCACCGTCT CCGACGTGGT CTCGACCGAC
CGCGAGGCGG TGATGCAGAG CATCCTCAAG GGCGTGCAGG AATACGGCAG GTCGGTTGGC
GTCGACATCA TCGACGTGCG TCTCAAGCGC GTCGATCTGC TGGCCAGCGT GACCGAGTCT
GTCTACCGCC GCATGGAGGC CGAGCGAAAG CGCGTGGCCA ACGAACTGCG CTCGACCGGC
GCCGCCGAAG GCGAGAAGAT CCGCGCCGAC GCCGACCGCC AGCGCGAGGT GGTGCTGGCC
GATGCCTACC GCGAAGCCCA GAAGATCAAG GGTGAGGGCG ATGCCCGCGC CGCCGACATC
TATGCCGACG CGTTCGGCCG CGATCCGCAG TTTGCCGCGT TCTGGCGCAG CATGGAGGCG
TATCGCGCGT CGTTCCGCGA CCGCAAGGAC GTGATGGTGC TGCAGCCCGG CAGCGATTTC
TTCAAGTTCA TGCGCGGCCC CAACGGCGGC GGCCAGTCCG TCGCACCGGC TGCCCAGGCT
GGGCGCCATC GCTAG
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| Protein sequence | MNRLISALVA LVIALAVLSS VVFVVDQRQY AVVFAFGEIK QVIKEPGLHF KLPPPLQNVI
FMDKRLMTID VAGADRFITA EKKNLLVDWF VKWRVSDPRL FYVSFKGDNR LAQDSMTQKI
NSIARDEFAR RTVSDVVSTD REAVMQSILK GVQEYGRSVG VDIIDVRLKR VDLLASVTES
VYRRMEAERK RVANELRSTG AAEGEKIRAD ADRQREVVLA DAYREAQKIK GEGDARAADI
YADAFGRDPQ FAAFWRSMEA YRASFRDRKD VMVLQPGSDF FKFMRGPNGG GQSVAPAAQA
GRHR
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