Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1222 |
Symbol | |
ID | 1220044 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1291796 |
End bp | 1293139 |
Gene Length | 1344 bp |
Protein Length | 447 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637237598 |
Product | hypothetical protein |
Protein accession | NP_519343 |
Protein GI | 17545941 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
TIGRFAM ID | [TIGR01933] HflK protein |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0015724 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCCCACAT CGGCGCGAGG CCTGTGGCAC CGCCTGCGCG TGCTGCTTTC GCTGAACGAC CCGCGTTGGG GGCGTGGCGA TGACAACAAC GCCGAGCGTG AAGACAAGGA CGATCCGAAG CGCCAAAGCA AGCCGCCCCA GGATGGCCCG CCCGACCTGG ACGAGCTGTG GCGCGACTTC AACCGCCGTC TGAACAATCT GTTCGGCCGC AAGGAAGGCG GCAACGGTAA TGGCCCGACG CCGCTGCGTC CCGGCAACGG CCGTGCGGGC TCCGGCCTGG GCGTCGGCGT GCTGCTGGCG GTGCTGGCGG TGCTGTGGCT GGCCAGCGGC TTCTTCATCG TGCAGGAAGG CCAGACCGGC GTGATCCTGC AGTTCGGCCG CTTCAAGTAT CAGGCGACCC CGGGCATCAA CTGGCGCTTG CCGTATCCGA TCGAGACGCA CGAGATCGTC AACCTGTCGG GCGTGCGCAC GCTGGAGATC GGCCGCACCA CGCAGATCAA GGACACCAAC CTGAAGGATT CGTCGATGCT CACGCAGGAC GAGAACATCG TCGACGTGCG TTTCTCGGTC CAGTACAACA TCGCCGATCC GGTCGAATAC CTGTTCTACA ACCGTACCGA TCAGCGCGGC GACGAGGAGC TCGTGACGCA GGCGGCGGAG ACGTCGGTGC GCGAGATCGT CGGCCGCAAC AAGATGGACG CCGTGCTGTA CGAAGGGCGC GATGCGGTCG GCCGCAACCT GGCGGAATCG ATCCAGCGCA TCCTGTCGGC GTACAAGACC GGCATCCGCA TCCTGAGCGT CAACGTGCAG AGCGTGCAGC CGCCCGAGCA GGTGCAGTCG GCCTTCGATG ACGTGACCAA GGCCGGGCAG GATCGCGAGC GCGCGATCTC CGAGGGCCAG GCCTATGCCA ACGACGTGGT GCCGCGCGCC AAGGGCACGG CCGCGCGCCT GGGCGAGGAG GCGCAGGGCT ACAAGGCCCG CGTGGTCGCC CGCGCGGAAG GCGATGCCGC CCGCTTCGCG TCGGTGCAGC GCGAATACGC GAAGGCGCCG CAGGTCACGC GCGATCGCAT TTACCTGGAA ACGATGCAGG ACATCTACGC CAACGCGACC AAGGTGCTGG TCGACCAGAG CGGCAACGGC AACCTGCTGT ACCTGCCGCT CGACAAGCTG ATCGCCCAGT CGCAGACCGG CGACGCGGCG CGTACGCAGC CGGTGCCCGG CGCGTCGCCG CAGGACAGCG GCTCGGCGCA GGGCATGCCT ACGCCCTCCA ATCCGTCGTC GATGAGCGAC GCCGACTCGC GCTCGCGCGA GGCGCTGCGT AATCGCGAAC GCGATTCCCG TTAA
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Protein sequence | MPTSARGLWH RLRVLLSLND PRWGRGDDNN AEREDKDDPK RQSKPPQDGP PDLDELWRDF NRRLNNLFGR KEGGNGNGPT PLRPGNGRAG SGLGVGVLLA VLAVLWLASG FFIVQEGQTG VILQFGRFKY QATPGINWRL PYPIETHEIV NLSGVRTLEI GRTTQIKDTN LKDSSMLTQD ENIVDVRFSV QYNIADPVEY LFYNRTDQRG DEELVTQAAE TSVREIVGRN KMDAVLYEGR DAVGRNLAES IQRILSAYKT GIRILSVNVQ SVQPPEQVQS AFDDVTKAGQ DRERAISEGQ AYANDVVPRA KGTAARLGEE AQGYKARVVA RAEGDAARFA SVQREYAKAP QVTRDRIYLE TMQDIYANAT KVLVDQSGNG NLLYLPLDKL IAQSQTGDAA RTQPVPGASP QDSGSAQGMP TPSNPSSMSD ADSRSREALR NRERDSR
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