| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1209 |
|---|
| Symbol | rumA |
|---|
| ID | 1220031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1277668 |
|---|
| End bp | 1279020 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637237585 |
|---|
| Product | 23S rRNA 5-methyluridine methyltransferase |
|---|
| Protein accession | NP_519330 |
|---|
| Protein GI | 17545928 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTGG CGGGGCCGCT GGAGATTGTG TCGCTCGATA ACGAAGCGCG CGGCGTGGGC
CGTCTGTCCA ACGAGGATGG TACGCCCGGC AAAGTGGTGT TCGTGGAAGG CGCATTGCCG
GGTGAGCGGG TGACTTACCG CAGCCATCGG GCCAAGCCGT CCTATGAGCA GGCCACCCTG
GTCGATATTC TGCGCCAGTC GGCCTCGCGC GTGACGCCGC AGTGCAGGTT CTTCGGCACC
TGCGGCGGCT GCTCGATGCA GCATCTGGAT TCGCGTGCGC AAATCGCCAT CAAGCAGCGC
GTGCTGGAAG ACGACCTGTG GCACCTGGCC AAGCTCCGTC CCGATGTGGT GTTCCGCCCC
ATCGCCGGGC CGGACTGGGG GTATCGCTAT CGCGCGCGGC TGACCGTGCG CCATGTGGCG
GCCAAGGGCG GAGTGCTGGT GGGCTTCCAC GAGCGCAAGA GCAGCTACGT GGCCGATATG
ACCTCGTGCG AGGTGCTCCC GCCGCACGTG TCCGCATTGC TGGTGCCGTT GCGCGAACTG
GTCGGCCGCC TGAGCATCGT CCAGCGCATG CCGCAGATCG AGGTGGCGGT CGGCCAGGAT
GTGACCGCGC TGGTGCTGCG TATCCTCGAG CCGCTCACGT CGGCCGACGA GGCGGAGCTG
CGCGCGTTCG CCGACCGGCA CGCCGTGCAG TTCTGGCTGC AGCCGAAAGG GCCGGACACG
GTCTATCCGT TCTATCCGCT GGATCGTGCG CTGACCTACA CGCTGCCCGA ATTCGGCATC
ACCATGCCCT TCAAGCCGAC CGATTTCACG CAGGTCAACC ACCAGATCAA CCGCGTGCTG
ATGTCGCGCG CACTCAAGCT GCTGGATGCC CGGCCGGGCG ACCGTCTGCT CGACCTGTTC
TGCGGCATCG GCAACTTCAC CCTGCCGATG GCGACGCGCG GGTGCGAAGT GATGGGCATC
GAAGGCAGCG AAGCGCTGAC GACCCGTGCG CTGGCCAATG CGCAGCACAA CGGGCTCGAT
GGGAAGACCA CGTTTGCCTG CCGCAATCTG TTCGAGGTGA GCGCGGATGA CATCGCGGCG
CTGGGCCGGT TCGATCGCTG GCTGGTCGAT CCGCCGCGCG AGGGGGCGCT GGCGGTGTCC
AAGGCGGTGG CCGAGCTGTC GCAGCGCGGC GGCGAGGCGG CGGCGCTGCT GCCCGGCCGC
ATCGTCTATG TGTCGTGCAA TCCGGCCACC CTGGCGCGCG ATGCGGGCCT GCTGGTACAC
GAAGCCGGTT ACCGCCTGGC GGGGGCCGGG GTGGTGAACA TGTTCCCGCA CACGTCGCAC
GTCGAATCGA TCGCGGTGTT CGAGCGCGCC TGA
|
|---|
| Protein sequence | MPVAGPLEIV SLDNEARGVG RLSNEDGTPG KVVFVEGALP GERVTYRSHR AKPSYEQATL
VDILRQSASR VTPQCRFFGT CGGCSMQHLD SRAQIAIKQR VLEDDLWHLA KLRPDVVFRP
IAGPDWGYRY RARLTVRHVA AKGGVLVGFH ERKSSYVADM TSCEVLPPHV SALLVPLREL
VGRLSIVQRM PQIEVAVGQD VTALVLRILE PLTSADEAEL RAFADRHAVQ FWLQPKGPDT
VYPFYPLDRA LTYTLPEFGI TMPFKPTDFT QVNHQINRVL MSRALKLLDA RPGDRLLDLF
CGIGNFTLPM ATRGCEVMGI EGSEALTTRA LANAQHNGLD GKTTFACRNL FEVSADDIAA
LGRFDRWLVD PPREGALAVS KAVAELSQRG GEAAALLPGR IVYVSCNPAT LARDAGLLVH
EAGYRLAGAG VVNMFPHTSH VESIAVFERA
|
|---|
| |