Gene RSc1201 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1201 
Symbol 
ID1220023 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand+ 
Start bp1269808 
End bp1270437 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content68% 
IMG OID637237577 
Producttranscription regulator protein 
Protein accessionNP_519322 
Protein GI17545920 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.582864 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.871194 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAGC ACCCCGAACC CGTCACCGCC GAGGGCACCG AAGCCCGGCA CGACACCCGC 
GACCGCATCC TGGACGCGGG GGCCGAGCTG ATCCTCGGAC GGGGCTTCTC GGCGGTCGGC 
CTGGCCGAGA TCCTTGGCCG CGCGCAGGTG CCCAAGGGCT CGTTCTATTA CTACTTCGAT 
TCCAAGGAAA ACTTCGGCGT CGCATTGCTG GAGCGGTATT TTCAGGATTA CGAGGCCGGC 
GTCGTTAGCC TGTTCAACGA CACGCGCATG ACGGCGCGTG AACGGCTGAT TCGCTACTTC 
GCCGCCTGGA TCGACCTGCA CGAGCGCAGC GCCTGCGAGG TTACCTGCCT GGCGGTCAAG 
CTGTCGGGCG AGGTCTCCGA TCTGTCGGAG CCGATGCGCA AGGTGCTGTC GGCCGGCATG 
ACGCGCATGG TCGAGCGTAT CGCCGCGGCC GTGGAGGCGG GCGTGGCGGA CGGTTCGCTC 
GCGCCGGTGG CCGATCCGCG CGGGCTGGCC GAAGGGCTGT ACGCGATGTG GATGGGCGGG 
GCGCTGCTGG CCAAGGCGCA CCGGTCGACC GCGCCGTTCC ACGGCTGCGT CGCACAGACC 
GAAGGGTTGC TGGCCAAGCC GAATCATTGA
 
Protein sequence
MSKHPEPVTA EGTEARHDTR DRILDAGAEL ILGRGFSAVG LAEILGRAQV PKGSFYYYFD 
SKENFGVALL ERYFQDYEAG VVSLFNDTRM TARERLIRYF AAWIDLHERS ACEVTCLAVK 
LSGEVSDLSE PMRKVLSAGM TRMVERIAAA VEAGVADGSL APVADPRGLA EGLYAMWMGG 
ALLAKAHRST APFHGCVAQT EGLLAKPNH