| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1181 |
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| Symbol | |
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| ID | 1220003 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 1243885 |
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| End bp | 1245681 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637237557 |
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| Product | inner membrane transmembrane protein |
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| Protein accession | NP_519302 |
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| Protein GI | 17545900 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000439298 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.187558 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCCA CCCGCGTCTC GCGCGTTCGC CTGACCGCCT CCGCCACCAG CGCCCTGCCG
CGCTGGCTGC TGCTCGCCAT CTGCGTGATC TACGGCCTGT CCGGCCTGTT CTACCGCGAT
CCATGGAAGA ACGAAGACGC CGCCGGCTTC GGTGTGATGT GGTCACTGGC GACCGGCAAT
GGCCAGGATT GGCTGATGCC CAACATCGTG GGCCGCCCGT TCGTGCAGGC CGGGCCGCTC
GTGTTCTGGA TCGGCGGCGC GTTCATCCGC GTGTTCGGCC AGTGGATGGG CCCGTCGGAC
GCCTCGCGCC TGACCACGGC ACTGTTCTTC TTCATCACCT GCGCATGCAT CTGGTACGGC
GCCTACCTGC TTGGCCGCCG CGCCGAGGTC CAGCCCTTTG AATTCGTCTT CGGCGGCCAG
CCGAGCCCCA TCGACTACGG CCGCACGCTG GCCGACGGCG CGCTGCTGAT CTTCCTCGCC
TGCGTGGGGC TGGCCCAGCG CGGTCACGAA ACCACGCCGC TGGTCGGCGC GCTGTGTTTC
GTGGCGCTCA CGCTGTACGG TCTGATCCGG GCGCTCGACC GGCCGGTGCT GGGCAGCCTG
ATCTATGGCT TCGGCATCGG CTGCCTGTCG CTGGCGGGCG GGCCGATCCT GCCCCTGGTC
ATCACGCTGT CCGTGCTGGT GACGGCGCGC CTGACCCGCG TGCTGCCGAT CAGGCCGCTG
CTGACGATTG CCCTGCCGGT ATCGCTGGTG CTGGGCTGGT CGTGGCCGGC GATGGCCTAC
CTGCTGGCCG CCAACCCGAC CGACGCCGTC ACCTTCATCC GCGAGTGGGC ACGCTTCGAC
CGCCGCCAGT ACACCGGGCC GACCCCGCAT TCGCTGGGCT ACATCGCGCG CAACCTGCTG
CCCTTCGCGT GGCCCGTGTG GCCACTGGCA GCATGGGCCT GGAAAAGCTG GAGCGGCATG
CGCACCGCCC CGCATATTGC GCTGCCGCTG GCGATCCTGG TGCCGCAGTC CGTGCTGCTG
CTCCTGCAAC CCCAGCCGGG CGACGACGGC TTCTTGCTGC TGATTCCGCC GATGGCCGTG
ATGGCGACGT TCGCCCTGCC CACGCTCAAG CGCGCGGCCA TCAACGCCAT CGACTGGTTC
GCGCTGCTGG CCTTCACCCT GCTCGGCGGC TTCGTCTGGC TGGTCTGGAT CGCCAAGATG
ACCGGCTATC CGGCGCAGAT CGCGCGCAAC CTGTACCGCC TGCTGCCAGG CTATCGACCG
ACGTTCAGCT GGACAGCGCT GCTGTGCGCG CTGCTCGTGA CGGCGGCCTG GGTCCTGATC
GTGGTGTGGC GAACCTCGCG CGTGCCCAAG GCGATCTGGC GCGCGGTGGT GATCTCCGCG
GCCGGCACCA CGCTGCTGTG GGTGCTGATG ATGACGCTGT GGCTGCCCAC CATCAACTAC
GCCAAGACGT ACCGCGAGGT CGCGCAGTCG GCCTCGCTGG CGCTGCCGCA GACGTATACA
TGCGTGCAGC CGATCCGCAT CGGCGACGCC CAGCTGGCAT CGTTCGCGTA CTTCGGTCAC
ATCCGCTTCG GCAATCCCGA AGACAACTGC GACATCCTGC TGCGCCATGA CCCGTACGAA
TACGGCGATC CATCCAGCAT GCCCAACTAC GAATGGCGCG TCATCTGGGA AGGCCGCCGC
CCCGCCGACC GCGACGAGCA CTTCCGCATG TACCGCCTGA CCGAAGCCGC CAAGGCCACC
CACCCGGCGC CCGTTCCGGC CACCTCGCGC AGGCGCAAGC TGCATGTTCC TGGCTGA
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| Protein sequence | MNPTRVSRVR LTASATSALP RWLLLAICVI YGLSGLFYRD PWKNEDAAGF GVMWSLATGN
GQDWLMPNIV GRPFVQAGPL VFWIGGAFIR VFGQWMGPSD ASRLTTALFF FITCACIWYG
AYLLGRRAEV QPFEFVFGGQ PSPIDYGRTL ADGALLIFLA CVGLAQRGHE TTPLVGALCF
VALTLYGLIR ALDRPVLGSL IYGFGIGCLS LAGGPILPLV ITLSVLVTAR LTRVLPIRPL
LTIALPVSLV LGWSWPAMAY LLAANPTDAV TFIREWARFD RRQYTGPTPH SLGYIARNLL
PFAWPVWPLA AWAWKSWSGM RTAPHIALPL AILVPQSVLL LLQPQPGDDG FLLLIPPMAV
MATFALPTLK RAAINAIDWF ALLAFTLLGG FVWLVWIAKM TGYPAQIARN LYRLLPGYRP
TFSWTALLCA LLVTAAWVLI VVWRTSRVPK AIWRAVVISA AGTTLLWVLM MTLWLPTINY
AKTYREVAQS ASLALPQTYT CVQPIRIGDA QLASFAYFGH IRFGNPEDNC DILLRHDPYE
YGDPSSMPNY EWRVIWEGRR PADRDEHFRM YRLTEAAKAT HPAPVPATSR RRKLHVPG
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