| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1180 |
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| Symbol | |
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| ID | 1220002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 1242552 |
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| End bp | 1243898 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637237556 |
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| Product | inner membrane transmembrane protein |
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| Protein accession | NP_519301 |
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| Protein GI | 17545899 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000781542 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.19952 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCCTGG CTGACATCCG CAGCATTGCC GCGCTGGCCT GGCCGGTGCT GGTCGGCCAG
CTCGCGGTGA TCGCCTTCGG CGTGCTGGAT ACCGCCATGG CCGGGCGTGC GTCGGCAGCG
GATCTGGCCG CGATCGGGCT GGGCGGCTCG ATCTATGTGA CGGTCTACAT CAGCCTGATG
GGCGTCTTGC AGGCGCTCTC GCCCATTGCC GGCCAGCTCT ACGGCGCGGG CCGGCACGGC
GAGATCGGCG AAGAGGTCCG CCAAGCCGCC TGGCTCGGGC TGGCGCTATC GGCCATCGGC
ATGCTGCTCT TGTGGTTTCC CGCACCGCTG CTGCGGCTCG CCGACGCCTC GCCCGAGCTG
ACCAGCAAGG CAACCGCCTA CCTCCGCTAC GAAGCGCTGG CGCTGCCCGC CGCGCTGGGT
TTCCGCATCT ACTCGGCGCT CAACAACGCG CTGTCGCGGC CGGTGATGGT GACGGTGCTG
CAATTGGGCG GGCTGGCCCT GAAGTTCCCG CTCAACGCCC TATTCCTGTA CGGCGGCCTC
GGCCTGCCCG CGATGGGCGG CCCCGGTTGC GCGCTGGCAT CGATGATCAT CGGCTGGCTG
TGGTGCATCG CGGGCGCGCT CATCCTGATG CGCAACCCGG TCTACCGGCC CTTCCGGATC
TTCACGCAGT TCTCGCCGCC CCACCTCGGA CGCTTGTGGG GACTGGTGCG CCTGGGCGTG
CCGATGGGCC TGACCTACCT GATCGAGATC ACGTCGTTCA CGCTGATGGC GATCTTCATC
GCGCGGATGG GAACCGTAGT GCTGGCCGGC CACCAGATTG CGGCCAACGT GGGAGCGGTG
GCCTATATGG TGCCACTGTC CCTGTCGATC GCCACATCGA CACTGGTGGC CCAAATGATC
GGCGCGCGCG ATCGCGATGC CGCGCGGCGG ATTGCCTGGA ACGGGCTCAA GCTCGCCGCC
GCCTGCGCGA TCGCTGTCGG CGGATGCGTT CTGCTGCTGC GCCGCGACCT GGTCGGCCTC
TACACCCGGG ATGCCACCGT GATGGCCATC GCGGTGCCGC TACTGCCGTT CATCGCGTTC
TACCAATTGT TCGATGCGCT GCAAGTCACG GCGGCGTTCA TCCTGCGCGC CTACAAGATC
GCGCTGATCC CGACGGTGAT CTACGCGCTG TCGCTCTGGG GCGTGGGATT GGGAGGGGGC
TACCTGCTCG GTTTTGGCCT CCTGGGGGAA TCCGCCGCCG CCCTGCGCGG CGCCGCCGGC
TTCTGGGCCG CCAATGCGCT CAGCCTTGCG GTGGCCGGCA CCTTGCTCGT CGGCTATTTC
AATCGCATCA GCCGCGCAGC CGACTAG
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| Protein sequence | MFLADIRSIA ALAWPVLVGQ LAVIAFGVLD TAMAGRASAA DLAAIGLGGS IYVTVYISLM
GVLQALSPIA GQLYGAGRHG EIGEEVRQAA WLGLALSAIG MLLLWFPAPL LRLADASPEL
TSKATAYLRY EALALPAALG FRIYSALNNA LSRPVMVTVL QLGGLALKFP LNALFLYGGL
GLPAMGGPGC ALASMIIGWL WCIAGALILM RNPVYRPFRI FTQFSPPHLG RLWGLVRLGV
PMGLTYLIEI TSFTLMAIFI ARMGTVVLAG HQIAANVGAV AYMVPLSLSI ATSTLVAQMI
GARDRDAARR IAWNGLKLAA ACAIAVGGCV LLLRRDLVGL YTRDATVMAI AVPLLPFIAF
YQLFDALQVT AAFILRAYKI ALIPTVIYAL SLWGVGLGGG YLLGFGLLGE SAAALRGAAG
FWAANALSLA VAGTLLVGYF NRISRAAD
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