Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1177 |
Symbol | |
ID | 1219993 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1238189 |
End bp | 1238857 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637237547 |
Product | putative transmembrane protein |
Protein accession | NP_519298 |
Protein GI | 17545896 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0196017 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.188955 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCATT TCGTACTTCA TTCCATGGCG CGCCTGGCGG TGGGGGTTGT GATCGGCTGC GGCGTGCTCG TCTCGAATGG AGTGCGCGCC GACACCGTGT TCAAGGACAC GGAAGTCCGC GCCGATGCCA AGCCGGAAGC CAAGCCCGGG ATCTTTTCCT CCATGGTTGG CGCCACCTCC GATGTGGTGA GCCGGACCGG CGACGTCGTC ATGAACGCGC TGGGCATGAT CGGCTTGCGC TACCGGTTCG GCGGCAATAC GCCTGAATCG GGCCTCGACT GCAGCGGCTT TGTCCGCTAC GTCTTCCACG ACACCTTCGG CTTCCTGCTG CCGCGTCGCG CGGTGGAGAT GAGCCGCGTC GGCACCAGCG TTGACATGAA GGATCTGCGC CCCGGCGATC TGGTGTTCTT CAACACCATG CACCGCACGT TCTCGCATGT GGCCATCTAC GTCGGCGACA ACAAAATGGT GCATGCGCCC TCGACCGGCA GCAAGATCCG CGTCGATGAC ATGACCGCGT CGTACTGGGT GTCGCGCTAC AACGGCGCGC GCCGCATCGA CTGGCAGGGC AACGGCCAGA TCAAGGAAGG CGCCGAGAAT TTCGTCGAGC AGCTGCAGCG GATCGACCCG AACGCCGCCG GCAAGTCGCT CTCGATGTAC GGCGGCTGA
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Protein sequence | MQHFVLHSMA RLAVGVVIGC GVLVSNGVRA DTVFKDTEVR ADAKPEAKPG IFSSMVGATS DVVSRTGDVV MNALGMIGLR YRFGGNTPES GLDCSGFVRY VFHDTFGFLL PRRAVEMSRV GTSVDMKDLR PGDLVFFNTM HRTFSHVAIY VGDNKMVHAP STGSKIRVDD MTASYWVSRY NGARRIDWQG NGQIKEGAEN FVEQLQRIDP NAAGKSLSMY GG
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