| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1173 |
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| Symbol | |
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| ID | 1219989 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1232165 |
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| End bp | 1234042 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637237543 |
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| Product | substrate-binding periplasmic (PBP) ABC transporter protein |
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| Protein accession | NP_519294 |
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| Protein GI | 17545892 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000592479 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.415148 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTGC TCGGAGCGGC GCTGAAGCGA CTAGCAATGA TGACCTGGGG CCTCGCCGCC
AGCCTGAGCG CGGCCTCCGC GTGGGCCGCG CACGGCTATG CCGAATACGG CGACCTGAAG
TACCCGGCGG GCTTCACGCA TTTCGCCTAT CTGAACCCGA AGGCGCCGAT CGGCGGCACG
CTCGCGCTCG GCAACCCGGA CCGCCGCACC AGCTTCGACA AGTTCAATCC GTACACGATC
AAGGGCACGG CCGCGCCGGG GCTCAACGCG CTGGTCTTCG AGAGCCTGCT GATCGGCAGC
TGGGACGAGA CCGCCAGTGG CTACGGCCTG CTCGCGGACG ACGTGAGCGT GGCGCCCGAC
GAGCTGTCCG TCACGTTCCA TCTCAATCCG CTCGCGCGCT TCTCCAACGG CGACCCGGTG
CGCGCCGCCG ACGTCAAATA TTCTTACGAC ATGCTGATGG GCAAGGGCGC GAGCCCCGCC
TACCGCAGCA TGACGGCGGA CGTGTCCAAG GTGACGGTGA TGGATGAGCG CACCATCCGC
TACGACTTCA AGCGCCGCAA CAAGGAGCTG CCGCTGATCG TCGGCAACCT GCCGGTGTTC
TCGCCCAAGT GGGGCAAGGG CAGCGGCAAG CCGGACGACC CGGAGGGCGG CAAGGACACG
CCCTTCGACA AGATCACCTT CCAGGAGCCG ATCGGCAGCG GGCCGTACCT CATCGAGCGC
TACGACGGCG CGCGCGGCAT CACCTTCCGC CGCAACCCCG ACTACTGGGG CCGCAACCTG
AACGTGCGGC GCGGCGCGTA CAACTTCGAG CACATCCAGT ACAAGCTCTA CAAGGACGAG
ACCGCGCGCC TGGAGGCCTT CAAGGCCGGC GAGTACGACG CCATGGTCGA GTATCGCGCC
AAGAACTGGG CGAAGAGCTA CGTGGGTGTG AAGTTCCGCA GCGGCGAGCT GGTCAAGAGC
GAATTTCCGC ACCGCAACGG CGCCGGCATG CAGGGCTTCG TGATGAATCT GCGTAAGCCG
ATCTTCCGCG ACCTGCGCGT GCGCCGTGCC CTGGTGCTGG CGCTCGACTT CGAGTGGCTG
AACCGCCAGC AGTTCTACGG CGCCTATCGC CGGCTCGACA GCTACTTCGC CAACAGCGAG
CTGGCCGCGT CCGACTCCGT CACCGGGCAG CCCGGCAAGG GCGAGCTTGC CCTGCTGGAG
CCGCTGCGCG GCAAGCTCGA TGCGGAGGTG TTCGGCGTGC TGCAGGCGCC GCCGTCGACC
GATCCGCCCG GCTCGCTGCG CGACAACCTG CGCCAGGCGC GGCGCTTGCT CGCCCAGGCC
GGCTGGACGT ACAGCGACGG CGCGCTGCGC AACACCAAGG GCGAGCCGTT CACCTTCGAG
ATGCTCGACG ACGGCGGCGC CATGAGCCGC GTGATGGCGG CCTATGTGCG CAACCTGGAG
AAGCTCGGCA TCCGCGTCAA CCAGCGCATC ACCGACTACG CGCTGTACCA GAAGCGCCTG
GAAGAATTCG ACTTCGACAT GATCTCGCTG CGGTTTCCCG ATTCGTCGAG CCCCGGCAAC
GAGCTGAAGG ACCGCTTCGG CTCGGCGGCG GCCGACGAGC AGGGCTCCGA CAACCTGATC
GGCCTGAAGT CGCCGGCGGT GGATGCGCTG ATCGACGACG TGCTGCGCGC GGGCAACCGC
GAGGAACTCG TGACGGCATC GCGCGCGCTC GACCGCGTGC TGATGCAGGG CTGCTACGTC
ATCCCGCACT GGTATGCGCC CACCCATCGC GTGGCCTACA ACCGGAACCT GATGTACCCG
GATCGCCTGC CGTACTACTA CTCGGCCGAG GGCTGGGTGC TGACGGCCTG GTGGCGCATT
CCCGGGTCCC CGAAATAA
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| Protein sequence | MSVLGAALKR LAMMTWGLAA SLSAASAWAA HGYAEYGDLK YPAGFTHFAY LNPKAPIGGT
LALGNPDRRT SFDKFNPYTI KGTAAPGLNA LVFESLLIGS WDETASGYGL LADDVSVAPD
ELSVTFHLNP LARFSNGDPV RAADVKYSYD MLMGKGASPA YRSMTADVSK VTVMDERTIR
YDFKRRNKEL PLIVGNLPVF SPKWGKGSGK PDDPEGGKDT PFDKITFQEP IGSGPYLIER
YDGARGITFR RNPDYWGRNL NVRRGAYNFE HIQYKLYKDE TARLEAFKAG EYDAMVEYRA
KNWAKSYVGV KFRSGELVKS EFPHRNGAGM QGFVMNLRKP IFRDLRVRRA LVLALDFEWL
NRQQFYGAYR RLDSYFANSE LAASDSVTGQ PGKGELALLE PLRGKLDAEV FGVLQAPPST
DPPGSLRDNL RQARRLLAQA GWTYSDGALR NTKGEPFTFE MLDDGGAMSR VMAAYVRNLE
KLGIRVNQRI TDYALYQKRL EEFDFDMISL RFPDSSSPGN ELKDRFGSAA ADEQGSDNLI
GLKSPAVDAL IDDVLRAGNR EELVTASRAL DRVLMQGCYV IPHWYAPTHR VAYNRNLMYP
DRLPYYYSAE GWVLTAWWRI PGSPK
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