Gene RSc1124 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1124 
Symbol 
ID1219939 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1182717 
End bp1183631 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content69% 
IMG OID637237493 
Producthypothetical protein 
Protein accessionNP_519245 
Protein GI17545843 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3484] Predicted proteasome-type protease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.539621 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.236863 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTACT GCGTCGCCAT GCGCCTGGAC GCTGGCCTGG TCTTCCTGTC GGATTCCCGC 
ACCAACGCGG GCGTCGACGC CATCTCCACC TTCCGCAAGA TGACCGTCTT CGAGCGCGAA
GGCGACCGCG TGATGGTGCT GCTGACCGCC GGCAATCTCG CCATCAGCCA GGCCGTGCGG
CAGGTGCTGA CCGAGGCGCG CGACAAGGCG CGCTCGCTGT GGACGGCGCG GGACATGTTC
GAGGCCACCA CCATCGTCGG CGAGGCGGTG CGCGAGGTGT ACGACCGCGA TGCCGCGGCG
CTGGCCAAGG CCAAGATCGA CTTCAACGTC AGCATCATCT TCGGCGGGCA GATCGGCGGC
GAGCGGCCGC GCCTGTTCAA CGTCTACGCC GCCGGCAATT TCATCGAAGC CACGCCCGAG
AACTGCTACT TCCAGATCGG CGAGGCCAAG TACGGCAAGC CCATCATCGA TCGCCTGATC
CGTGCGTCGC TGCCGCTGGA CGAAGCCGCC AAATGCGCGC TGATCTCGAT GGATTCGACG
CTGAAATCGA ATATTTCGGT GGGGTTGCCG CTCGACCTGC TGGTCTACGA AGCCGACTCG
CTGCGCGTGA CGCGCTTTGT CGCCATCGAC GAAGAGAATC CGTACTTCGC GATGATCCGC
AGCACGTGGG GCAAGCGCCT GCGCCAGGTC TTCGCCGAGA TCGAGGATCC GGACTGGCAG
ACCGGCACCC ATCCCGCGCA TCCGCTGCGC CGGGCGGGCC ACCCCACCGC CGAAGTCGAG
CCGGTCCGCA TCGCGCCGCC GGCCGCACCG CCCGCGGCGG AGGGCGCTGC CGTGCCGCAG
CGCGCGCCGG GGCCCGCGTT CGGGCAGGGC GCCGCGGCGC AGCGCGTGGC CGGCGGATCG
CACGAACCAC ACTGA
 
Protein sequence
MTYCVAMRLD AGLVFLSDSR TNAGVDAIST FRKMTVFERE GDRVMVLLTA GNLAISQAVR 
QVLTEARDKA RSLWTARDMF EATTIVGEAV REVYDRDAAA LAKAKIDFNV SIIFGGQIGG
ERPRLFNVYA AGNFIEATPE NCYFQIGEAK YGKPIIDRLI RASLPLDEAA KCALISMDST
LKSNISVGLP LDLLVYEADS LRVTRFVAID EENPYFAMIR STWGKRLRQV FAEIEDPDWQ
TGTHPAHPLR RAGHPTAEVE PVRIAPPAAP PAAEGAAVPQ RAPGPAFGQG AAAQRVAGGS
HEPH